Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2173 ATGGCGGCTTCCCTTTGCTTTTTGCTTCTAATTTCTCTCTCTCTGTTGTTGTGGAGTGCAGCCCCAGCCTCAGCTTCCTCCTTGCCCAATTCAGTCCAAGATCCTCATCGTGTAGTTCAAGAAGTTGAAAGGAGCATCAATGTGTCGAGGAGGAACCTAGGGTATTTCTCATGCGGAACGGGAAACCCAATAGACGACTGCTGGAGGTGCGATCCGAATTGGGAGAGCAATCGAAAGCGACTGGCGGACTGCGCGATCGGATTCGGAAAGAACGCAATGGGAGGAAGAAACGGGCGGTTCTACGTGGTGAGTGACGCGGGAGACGACGATGCAGTGAACCCGCGGCCGGGGACACTCCGGCACGCGGTGATCCAAAACGAGCCGCTGTGGATAATCTTCAAACGGGACATGGTGATACGGCTGAAACAGGAGCTGGTAATGAACTCGTACAAGACCATTGACGGGAGAGGGGCGAGCGTACACGTGGCAGGAGGGCCATGCATCACCATCCATTACGCGAGCAACATCATCATCCATGGGATCCACATACATGACTGCAAGAGAGGGGGGAATGGTAACATACGGGACTCCCCACAGCACTCGGGGTGGTGGACCGTATCGGACGGCGATGGAGTGTCCATTTTTGGCGGGAAACACATCTGGGTGGATCACTGTTCTCTGTCCAATTGCAACGATGGATTGATAGATGCGATCCATGGGTCCACTGCCATCACCATATCCAATAACTACATGACACATCATGATAAGGTCATGCTGTTGGGGCATAGCGATTCATACACGCAGGATAAAGATATGCAGGTTACCATTGCCTTTAACCATTTTGGAGAGGGCCTTGTCCAAAGAATGCCAAGATGCAGACATGGGTATTTCCACGTGGTGAACAACGATTACACGCACTGGGAAATGTACGCCATCGGAGGGAGTGCATCGCCGACCATATACAGCCAAGGCAACAGATTCGCGGCGCCGGACAACCGCTTCCGGAAGGAGGTGACGAAGCACGAGGACGCGCCGGAGACCCAGTGGCGCCACTGGAACTGGCGCTCCGAGGGCGACCTGCTCTTGAACGGCGCTTACTTCCGCCAGTCCGGCGCCGGCGCCGCCTCCAGCTACGCCAGAGCTTACAGCCTCAGTGCAAGACCCTCCTCCCTCGTCGGATCCATCACCCTCACCGCCGGCGCCCTCAACTGCCGAAGAGGCTCCCGCTGCTAG 1233 55.8 MAASLCFLLLISLSLLLWSAAPASASSLPNSVQDPHRVVQEVERSINVSRRNLGYFSCGTGNPIDDCWRCDPNWESNRKRLADCAIGFGKNAMGGRNGRFYVVSDAGDDDAVNPRPGTLRHAVIQNEPLWIIFKRDMVIRLKQELVMNSYKTIDGRGASVHVAGGPCITIHYASNIIIHGIHIHDCKRGGNGNIRDSPQHSGWWTVSDGDGVSIFGGKHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSASPTIYSQGNRFAAPDNRFRKEVTKHEDAPETQWRHWNWRSEGDLLLNGAYFRQSGAGAASSYARAYSLSARPSSLVGSITLTAGALNCRRGSRC 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23547285 23550461 - MC04g1594 Mch4g2173 686885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2173 410 Gene3D - 61 403 IPR012334 -
Mch4g2173 410 SUPERFAMILY Pectin lyase-like 46 405 IPR011050 -
Mch4g2173 410 PANTHER PECTATE LYASE 18-RELATED 17 407 IPR045032 GO:0030570(InterPro)
Mch4g2173 410 Pfam Pectate lyase 142 327 IPR002022 -
Mch4g2173 410 FunFam Pectate lyase 61 403 - -
Mch4g2173 410 SMART amb_all 136 333 IPR002022 -
Mch4g2173 410 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Mch4g2173 410 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Mch4g2173 410 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Mch4g2173 410 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Mch4g2173 410 PRINTS Pollen allergen Amb family signature 108 133 IPR018082 -
Mch4g2173 410 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Mch4g2173 410 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Mch4g2173 410 PRINTS Pollen allergen Amb family signature 352 376 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2173 Mch-Chr4:23547285 Mch8g0067 Mch-Chr8:378620 3.85E-224 dispersed
Mch3g1395 Mch-Chr3:16452225 Mch4g2173 Mch-Chr4:23547285 3.22E-236 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2173 K01728 - csv:101217834 736.873