Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2178 ATGGAATTAGTTGCTGCAGCTGCAAGTTTGAGCCCGGCCACCATTTTGGTGATAGCTTTGAGCTTGGCAATGGCCGCAATCATCTCCCACTCTCTTCTGAAACTCTCTGTAATAAAGGCAGCACAAAATTACCCTAATTTGCCTCCTGGCTCCATGGGCTTCCCATTCCTTGGACAGACTCTCGGCCTTCTCAAGCCCCATCCTTCAAACTCCATTGGAACCTTCCTCCACCATCATTGCTCCAGGTACGGGAAGGTTTTCAAGTCTCATCTATTCGGGTGGCCGGCGATAGTGTCGTGCGATCAAGAGCTGAATATGTTCATTCTTCAGAACGACGACAAACTTTTCAAAGTGAGTTATCCGAAGGCGATGCATGGCATTCTCGGCACCAATTCGCTGATTATTGCCGCCGGAGACACCCACCGGAAGCTCAGAAACGTCGTCGTTAGCTTCATCGGCTGGTGCAAATCCAGACCCAGTTTCCTTCACTGCGTCCACAACCTCACTATATCTTTGATGGACTCATGGCGATCCCAAAACCAAGTGTTCTTTTGCAAAGAAGTCAAGATGTTTGCTCTTAGCATTATGGTGAAGGAACTTCTGGGCATTGAAGCGAAAGAGGCGATAGGATCAAAAATATTGGAAGAGTTCGAAAAGTACATGAAAGGCTTTGTTTCTTTGCCTATAAATCTCCCCGGGACAGCATATTCTAATGCTGTCAAGGCTAGGGAGAGGCTTTCCTGCATGGTAAAAGAGATGATGAGGGAGAGAAAAAGGAGGGGAATGGTGGTGGGGGCTGATGAGGACTTTCTACAAGTCATAATGTCAAATTGGAAGCTTAATGATGAAGAGATTGTGAGTGTTGTGTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACCCTTATGGGATTGATTGTCTATTTTCTTGCACATTCACCTCCCAATGTTCTTGCAAAGTTAAAGGAAGAACATGAAGCAATAAGAATCCGTAAAAGGAATGGTGAAAGTCTCAACTTGGAAGATTACAAACAAATGGAGTTCACAAACAATGTGATGTTTGAAGCCATGAGATGTGGGAATGTGGTCAAATTTTTGCACAGGGAAGCGGTTAAAGATGTCAAGTTCAAAGAAATTGTGATACCCTCTGGATGGAAAGTTCATCCAGTTTTCTCAGCAGTTCATCTCGATCCAGCCCTTCATCCAAATCCTCAACAATTCAATCCTTGGAGATGGACGGATGATAAAGAAATGGGCAAAAAAGTGACACCATTTGGTGGAGGGCCAAGGCTTTGTCCAGGGGTTGAGCTTGCCAAACTAGAGATTTCTTTCTTCCTCCATCATCTTGTCCTTAATTATAGTATGCCCAAGGAGGAGATCTGTGAAGTTAATTTAACGACTGATCTCAGCCCAGAATCTAGTAAGAAAAGAGCAAAAAGAAGTAAAAACAAAAAGAAGCAGTTGTTGACTGAAGGTGTAGATGTCATGAAAATGAAAGAAGTAAGATCTGTTCAGGTGGAGGAAAGCAACATAAACTCTGATGGTGACAAAGTAAAAAAGAAGAAAAAAGGAAAGAAGAGTGCTAAACAATGTGTAGAAGAGAACTCTATCAAGGCTGAGGCAGGAGAAATTGAAAGTAAAGCAGAGAGTTCTATGAAAGAGGGTGGTCCTTTCTCTGATGGTGGAGGTGAGAAAGATGCAGCTTTTGAAAAGAAGCAAATTCCACTGGAGCATGCTGAGGATGCGAGGGCAGACAGTATTGTTAGAGAAAACTCTGGAGAGAAGATTCTAGAGTCTAACAATGGAAAATCAGATCAAAGGATAAAGAGGAAGAAACGGCTTTTGAAGGAATCTGCAAAAGCAAATATGTGTGGGATTTGTTACTTGAGCCGAGTTCCTCCACATATGGATCCATTGAAACTTCGACAGATCCTCTCACATTATGGGGAGATACAAAGAATTTATCTTGCACCCGAGGACGCTGCAAATCAAGTACAACGAAAGCGTGCAGGAGGGTTTCGAGGGCAATTATTTTCAGAAGGATGGGTTGAATTTACTGATAAAAGAGTTGCGAAGAAGGTTGCTACTATGTTAAATGGTGAACAAATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAATATCAAGTATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGCTTACAAGCATGCTATACGGGAGCAGAAACTAGCTTTGGAAATTTCTGCCGCTAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTTGATAAATCACGCGCATTGAATTCCATTGAAGAACGGCTGAAGAAGAAGCAGAAGTTGCGAGAAGATTCAGAAATGAGTTCTGAACCTGTTGTTTACCAGAAACTTCCAAAACTGATCCGCAACTTCCCACAAACACAACCAGTTGCAGATTCTGCAGTAGAAAACAAACAGAGACTGTCTAAAAATATCCTGGCTGGGGTGTTTGGAAGTTCGTAG 2505 42.63 MELVAAAASLSPATILVIALSLAMAAIISHSLLKLSVIKAAQNYPNLPPGSMGFPFLGQTLGLLKPHPSNSIGTFLHHHCSRYGKVFKSHLFGWPAIVSCDQELNMFILQNDDKLFKVSYPKAMHGILGTNSLIIAAGDTHRKLRNVVVSFIGWCKSRPSFLHCVHNLTISLMDSWRSQNQVFFCKEVKMFALSIMVKELLGIEAKEAIGSKILEEFEKYMKGFVSLPINLPGTAYSNAVKARERLSCMVKEMMRERKRRGMVVGADEDFLQVIMSNWKLNDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKEEHEAIRIRKRNGESLNLEDYKQMEFTNNVMFEAMRCGNVVKFLHREAVKDVKFKEIVIPSGWKVHPVFSAVHLDPALHPNPQQFNPWRWTDDKEMGKKVTPFGGGPRLCPGVELAKLEISFFLHHLVLNYSMPKEEICEVNLTTDLSPESSKKRAKRSKNKKKQLLTEGVDVMKMKEVRSVQVEESNINSDGDKVKKKKKGKKSAKQCVEENSIKAEAGEIESKAESSMKEGGPFSDGGGEKDAAFEKKQIPLEHAEDARADSIVRENSGEKILESNNGKSDQRIKRKKRLLKESAKANMCGICYLSRVPPHMDPLKLRQILSHYGEIQRIYLAPEDAANQVQRKRAGGFRGQLFSEGWVEFTDKRVAKKVATMLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISAAKRERDFYLSKVDKSRALNSIEERLKKKQKLREDSEMSSEPVVYQKLPKLIRNFPQTQPVADSAVENKQRLSKNILAGVFGSS 834
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 23575704 23585030 + MC04g1598 Mch4g2178 686890
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2178 834 MobiDBLite consensus disorder prediction 565 593 - -
Mch4g2178 834 FunFam Cytochrome P450 724B1 42 466 - -
Mch4g2178 834 Gene3D - 587 711 IPR012677 -
Mch4g2178 834 Pfam Cytochrome P450 48 457 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Mch4g2178 834 PRINTS P450 superfamily signature 295 312 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 MobiDBLite consensus disorder prediction 470 492 - -
Mch4g2178 834 MobiDBLite consensus disorder prediction 505 610 - -
Mch4g2178 834 CDD CYP90-like 79 461 - -
Mch4g2178 834 MobiDBLite consensus disorder prediction 528 551 - -
Mch4g2178 834 PANTHER CYTOCHROME P450 26 46 457 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Mch4g2178 834 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 626 708 IPR000504 GO:0003723(InterPro)
Mch4g2178 834 SUPERFAMILY Cytochrome P450 45 456 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 Gene3D Cytochrome P450 37 481 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 PRINTS E-class P450 group I signature 284 301 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 PRINTS E-class P450 group I signature 391 415 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 PRINTS E-class P450 group I signature 80 99 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Mch4g2178 834 CDD RRM_ABT1_like 626 723 IPR034353 -
Mch4g2178 834 SUPERFAMILY RNA-binding domain, RBD 621 708 IPR035979 GO:0003676(InterPro)
Mch4g2178 834 Coils Coil 769 789 - -
Mch4g2178 834 Pfam RNA recognition motif 629 708 IPR000504 GO:0003723(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2178 Mch-Chr4:23575704 Mch9g1476 Mch-Chr9:17187767 1.01E-86 dispersed
Mch10g0735 Mch-Chr10:5077139 Mch4g2178 Mch-Chr4:23575704 5.32E-112 transposed
Mch3g1405 Mch-Chr3:16549600 Mch4g2178 Mch-Chr4:23575704 2.21E-16 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2178 K12639 - csv:101215045 672.159