Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g2178 | ATGGAATTAGTTGCTGCAGCTGCAAGTTTGAGCCCGGCCACCATTTTGGTGATAGCTTTGAGCTTGGCAATGGCCGCAATCATCTCCCACTCTCTTCTGAAACTCTCTGTAATAAAGGCAGCACAAAATTACCCTAATTTGCCTCCTGGCTCCATGGGCTTCCCATTCCTTGGACAGACTCTCGGCCTTCTCAAGCCCCATCCTTCAAACTCCATTGGAACCTTCCTCCACCATCATTGCTCCAGGTACGGGAAGGTTTTCAAGTCTCATCTATTCGGGTGGCCGGCGATAGTGTCGTGCGATCAAGAGCTGAATATGTTCATTCTTCAGAACGACGACAAACTTTTCAAAGTGAGTTATCCGAAGGCGATGCATGGCATTCTCGGCACCAATTCGCTGATTATTGCCGCCGGAGACACCCACCGGAAGCTCAGAAACGTCGTCGTTAGCTTCATCGGCTGGTGCAAATCCAGACCCAGTTTCCTTCACTGCGTCCACAACCTCACTATATCTTTGATGGACTCATGGCGATCCCAAAACCAAGTGTTCTTTTGCAAAGAAGTCAAGATGTTTGCTCTTAGCATTATGGTGAAGGAACTTCTGGGCATTGAAGCGAAAGAGGCGATAGGATCAAAAATATTGGAAGAGTTCGAAAAGTACATGAAAGGCTTTGTTTCTTTGCCTATAAATCTCCCCGGGACAGCATATTCTAATGCTGTCAAGGCTAGGGAGAGGCTTTCCTGCATGGTAAAAGAGATGATGAGGGAGAGAAAAAGGAGGGGAATGGTGGTGGGGGCTGATGAGGACTTTCTACAAGTCATAATGTCAAATTGGAAGCTTAATGATGAAGAGATTGTGAGTGTTGTGTTGGACATATTGCTTGGAGGTTATGAGACAACAGCTACCCTTATGGGATTGATTGTCTATTTTCTTGCACATTCACCTCCCAATGTTCTTGCAAAGTTAAAGGAAGAACATGAAGCAATAAGAATCCGTAAAAGGAATGGTGAAAGTCTCAACTTGGAAGATTACAAACAAATGGAGTTCACAAACAATGTGATGTTTGAAGCCATGAGATGTGGGAATGTGGTCAAATTTTTGCACAGGGAAGCGGTTAAAGATGTCAAGTTCAAAGAAATTGTGATACCCTCTGGATGGAAAGTTCATCCAGTTTTCTCAGCAGTTCATCTCGATCCAGCCCTTCATCCAAATCCTCAACAATTCAATCCTTGGAGATGGACGGATGATAAAGAAATGGGCAAAAAAGTGACACCATTTGGTGGAGGGCCAAGGCTTTGTCCAGGGGTTGAGCTTGCCAAACTAGAGATTTCTTTCTTCCTCCATCATCTTGTCCTTAATTATAGTATGCCCAAGGAGGAGATCTGTGAAGTTAATTTAACGACTGATCTCAGCCCAGAATCTAGTAAGAAAAGAGCAAAAAGAAGTAAAAACAAAAAGAAGCAGTTGTTGACTGAAGGTGTAGATGTCATGAAAATGAAAGAAGTAAGATCTGTTCAGGTGGAGGAAAGCAACATAAACTCTGATGGTGACAAAGTAAAAAAGAAGAAAAAAGGAAAGAAGAGTGCTAAACAATGTGTAGAAGAGAACTCTATCAAGGCTGAGGCAGGAGAAATTGAAAGTAAAGCAGAGAGTTCTATGAAAGAGGGTGGTCCTTTCTCTGATGGTGGAGGTGAGAAAGATGCAGCTTTTGAAAAGAAGCAAATTCCACTGGAGCATGCTGAGGATGCGAGGGCAGACAGTATTGTTAGAGAAAACTCTGGAGAGAAGATTCTAGAGTCTAACAATGGAAAATCAGATCAAAGGATAAAGAGGAAGAAACGGCTTTTGAAGGAATCTGCAAAAGCAAATATGTGTGGGATTTGTTACTTGAGCCGAGTTCCTCCACATATGGATCCATTGAAACTTCGACAGATCCTCTCACATTATGGGGAGATACAAAGAATTTATCTTGCACCCGAGGACGCTGCAAATCAAGTACAACGAAAGCGTGCAGGAGGGTTTCGAGGGCAATTATTTTCAGAAGGATGGGTTGAATTTACTGATAAAAGAGTTGCGAAGAAGGTTGCTACTATGTTAAATGGTGAACAAATAGGAGGAAGGAAGAGGTCATCTTTCTACTATGATCTCTGGAATATCAAGTATTTGAGTAAATTCAAGTGGGATGATCTTACTGAAGAAACTGCTTACAAGCATGCTATACGGGAGCAGAAACTAGCTTTGGAAATTTCTGCCGCTAAGAGGGAGAGGGATTTCTATCTTTCTAAAGTTGATAAATCACGCGCATTGAATTCCATTGAAGAACGGCTGAAGAAGAAGCAGAAGTTGCGAGAAGATTCAGAAATGAGTTCTGAACCTGTTGTTTACCAGAAACTTCCAAAACTGATCCGCAACTTCCCACAAACACAACCAGTTGCAGATTCTGCAGTAGAAAACAAACAGAGACTGTCTAAAAATATCCTGGCTGGGGTGTTTGGAAGTTCGTAG | 2505 | 42.63 | MELVAAAASLSPATILVIALSLAMAAIISHSLLKLSVIKAAQNYPNLPPGSMGFPFLGQTLGLLKPHPSNSIGTFLHHHCSRYGKVFKSHLFGWPAIVSCDQELNMFILQNDDKLFKVSYPKAMHGILGTNSLIIAAGDTHRKLRNVVVSFIGWCKSRPSFLHCVHNLTISLMDSWRSQNQVFFCKEVKMFALSIMVKELLGIEAKEAIGSKILEEFEKYMKGFVSLPINLPGTAYSNAVKARERLSCMVKEMMRERKRRGMVVGADEDFLQVIMSNWKLNDEEIVSVVLDILLGGYETTATLMGLIVYFLAHSPPNVLAKLKEEHEAIRIRKRNGESLNLEDYKQMEFTNNVMFEAMRCGNVVKFLHREAVKDVKFKEIVIPSGWKVHPVFSAVHLDPALHPNPQQFNPWRWTDDKEMGKKVTPFGGGPRLCPGVELAKLEISFFLHHLVLNYSMPKEEICEVNLTTDLSPESSKKRAKRSKNKKKQLLTEGVDVMKMKEVRSVQVEESNINSDGDKVKKKKKGKKSAKQCVEENSIKAEAGEIESKAESSMKEGGPFSDGGGEKDAAFEKKQIPLEHAEDARADSIVRENSGEKILESNNGKSDQRIKRKKRLLKESAKANMCGICYLSRVPPHMDPLKLRQILSHYGEIQRIYLAPEDAANQVQRKRAGGFRGQLFSEGWVEFTDKRVAKKVATMLNGEQIGGRKRSSFYYDLWNIKYLSKFKWDDLTEETAYKHAIREQKLALEISAAKRERDFYLSKVDKSRALNSIEERLKKKQKLREDSEMSSEPVVYQKLPKLIRNFPQTQPVADSAVENKQRLSKNILAGVFGSS | 834 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23575704 | 23585030 | + | MC04g1598 | Mch4g2178 | 686890 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g2178 | 834 | MobiDBLite | consensus disorder prediction | 565 | 593 | - | - | |
| Mch4g2178 | 834 | FunFam | Cytochrome P450 724B1 | 42 | 466 | - | - | |
| Mch4g2178 | 834 | Gene3D | - | 587 | 711 | IPR012677 | - | |
| Mch4g2178 | 834 | Pfam | Cytochrome P450 | 48 | 457 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 426 | 435 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Mch4g2178 | 834 | PRINTS | P450 superfamily signature | 295 | 312 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | PRINTS | P450 superfamily signature | 433 | 444 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | PRINTS | P450 superfamily signature | 424 | 433 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | MobiDBLite | consensus disorder prediction | 470 | 492 | - | - | |
| Mch4g2178 | 834 | MobiDBLite | consensus disorder prediction | 505 | 610 | - | - | |
| Mch4g2178 | 834 | CDD | CYP90-like | 79 | 461 | - | - | |
| Mch4g2178 | 834 | MobiDBLite | consensus disorder prediction | 528 | 551 | - | - | |
| Mch4g2178 | 834 | PANTHER | CYTOCHROME P450 26 | 46 | 457 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Mch4g2178 | 834 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 626 | 708 | IPR000504 | GO:0003723(InterPro) | |
| Mch4g2178 | 834 | SUPERFAMILY | Cytochrome P450 | 45 | 456 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | Gene3D | Cytochrome P450 | 37 | 481 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | PRINTS | E-class P450 group I signature | 284 | 301 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | PRINTS | E-class P450 group I signature | 423 | 433 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | PRINTS | E-class P450 group I signature | 391 | 415 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | PRINTS | E-class P450 group I signature | 80 | 99 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | PRINTS | E-class P450 group I signature | 433 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch4g2178 | 834 | CDD | RRM_ABT1_like | 626 | 723 | IPR034353 | - | |
| Mch4g2178 | 834 | SUPERFAMILY | RNA-binding domain, RBD | 621 | 708 | IPR035979 | GO:0003676(InterPro) | |
| Mch4g2178 | 834 | Coils | Coil | 769 | 789 | - | - | |
| Mch4g2178 | 834 | Pfam | RNA recognition motif | 629 | 708 | IPR000504 | GO:0003723(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g2178 | Mch-Chr4:23575704 | Mch9g1476 | Mch-Chr9:17187767 | 1.01E-86 | dispersed | |
| Mch10g0735 | Mch-Chr10:5077139 | Mch4g2178 | Mch-Chr4:23575704 | 5.32E-112 | transposed | |
| Mch3g1405 | Mch-Chr3:16549600 | Mch4g2178 | Mch-Chr4:23575704 | 2.21E-16 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch4g2178 | K12639 | - | csv:101215045 | 672.159 |