Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2198 TCAAGTTCAAGCTACTCGAACTCGCCATGTGCGGCATGCAAGTTCTTGAGAAGAAAATGTTTAGCAGAATGCATATTCGCGCCCTACTTCCCACCCGAGGAGCCGACCAAATTCACCAACGTCCACAAGATATTCGGAGCGAGCAATGTGAGCAAGATCCTCAACGAGGTCCAGCCCCACCAGCGGGAGGACGCTGTAAACTCTCTTGCCTACGAGGCTGAGGCCCGCATGAAAGACCCCGTCTACGGCTGCGTCGGTGCCATCTCCGTCCTCCAGCGTCACGTCCTTCGTCTTCAGAAGGAACTCGACGCCACCAATACTGATTTGGTTCGATACTCCACCGCCACCGCCACCGCCACCGCCCGCCCCGCAAGAAGGCCGCCTCGCCATCATTCTGGTGTGTATTTTACTTCAAATGATCATGATCATCCTTATAAAGATCAGGAAAGGGAG 453 54.53 SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFTNVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNTDLVRYSTATATATARPARRPPRHHSGVYFTSNDHDHPYKDQERE 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23699283 23699735 + MC04g1617 Mch4g2198 686910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2198 151 MobiDBLite consensus disorder prediction 116 151 - -
Mch4g2198 151 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Mch4g2198 151 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 126 - -
Mch4g2198 151 MobiDBLite consensus disorder prediction 135 151 - -
Mch4g2198 151 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2198 Mch-Chr4:23699283 Mch8g2579 Mch-Chr8:28931017 5.53E-54 dispersed
Mch3g1425 Mch-Chr3:16660368 Mch4g2198 Mch-Chr4:23699283 8.61E-56 wgd
Mch4g2198 Mch-Chr4:23699283 Mch6g0126 Mch-Chr6:743224 3.82E-63 wgd
Mch4g2198 Mch-Chr4:23699283 Mch8g1482 Mch-Chr8:11184109 1.38E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43257 PF03195 LOB 3.20E-41 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2198 - - - 0.0