Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2219 ATGGAGAATCCTTCAGAAAAAAAATATCCATTGAATGCAAAGGATTATAACTTACATGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAAGCACTGTGCATTCCACTAAATGAGATTGTCGCTATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGACGAGAAGTTCAAACAATGACTTTGATTGATCATCCAAATTTATTAAGAGCACATTGTTCATTCACAGCTGGCCACCACCTCTGGGTTGTGATGCCTTACATGTCTGGGGGATCTTGCCTTCATATTATGAAATCTACTTATTCTGAAGGTTTTGATGAGCCTGTCATAGCTACTTTGTTGCGCGAGGTTCTGAAAGCTCTTGTTTATCTTCATGCTCATGGCCACATTCATAGAGATGTAAAGGCTGGGAATATTTTAATTGATTCTAATGGTACGGTCAAGTTAGCTGATTTTGGAGTCTCAGCCTGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACATTTGTTGGAACTCCTTGCTGGATGGCACCTGAGGTTATGCAGCAATTACATGGATATGACTTCAAGGCAGACATCTGGTCATTTGGAATAACAGCACTTGAACTGGCTCATGGGCATGCTCCATTTTCAAAGTACCCACCAATGAAAGTTTTGCTAATGACATTACAAAATGCTCCTCCTGGTCTCGACTATGAAAGAGATAAGAGGTTCTCTAAGTCGTTCAAAGAAATGGTGGCTACATGCCTAGTGAAGGATCCTAAGAAACGGCCAAGTTCAGAGAAGCTCTTAAAGCACCCATTTTTTAAACAAGCCCGTTCAGTTGATTATCTTGCTCGAACAATTCTGGATGGCCTTTCTCCATTAGGGGAACGTTTTAAGAAGCTACAGGCAAAAGAAGCTGATCTTCTAGGGCAGAACAAGGCTTTGTATGGGGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAATCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCAAACATAGAAGATTTAGATGTACATACAACAAAGCAAAGAAACAAGAATAATGATTTTAGCTTTCCAGTAGAGGGTTCATCCCTTGAAAAGCCGAATCACCTAACTGCTGCAGCTAGTCAGGAGGATGGTTTCAGTGATCTTCATGATCTGGAGAGCTCCCTTGCTTCTTTCCCTATAAAACCTCTCGAAGCACTGAAAGATTGTTTTGACATCTATGAAGATATAAGCACAGACAGTGTAAGGCCAGGGGATCGAGAAAATGGAAGAACTGAGGGTGAAAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGGCAGAGAATAAGAGGTCCTTCAGTGGTTCACTAATCTCTGACAATGCAGTTTCCCCTAAAAAGATTATTGTAGATGGTGATAGGGACTATCTTCAGTCAAAACTTCCAGCTGAGCGTAGTTACAGTGGTCCATTATTATATCGCCAGAAAAGAGATACAAGTAATATTTCAGCTGTCGATGATACATCAGATGGAACAGTTGTCCAACGCAAGGGGCGATTTAAAGTTACTTCGGCAGAGCTCAGTCCAAAGGGTCCTATGACGGGCTCATTTAGTCCAGTCTGCGGAGGGACGATAAGTCCGACGTCCCTGAACTTTACACCTGCTCTGCTCCTCCCACCGATGCAATGCATTTTGCAGCAGAACATCCTGCAACGGGAAGAGATCGTCAAATTGATCAAGTATTTGGAACAAATGACTGGCAAGAATCCAGATGTATCAGAGACAGTCACCAGTGAAACTCTGCAGATGCCTCCGGCTTCCTCTAGGGAAAGAGAGTTACAATCTCAGGTCGTTCATTTGCAACAGAGAATCGATAATCTTGCTGAGGAATTAGAGAAGCAGAAGTTGAAAAACGCCGAGTTTGAAAGACACATGATGCGCAATGGGTAG 2001 42.38 MENPSEKKYPLNAKDYNLHEEVGEGVSATVYKALCIPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLIDHPNLLRAHCSFTAGHHLWVVMPYMSGGSCLHIMKSTYSEGFDEPVIATLLREVLKALVYLHAHGHIHRDVKAGNILIDSNGTVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKQARSVDYLARTILDGLSPLGERFKKLQAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNKNNDFSFPVEGSSLEKPNHLTAAASQEDGFSDLHDLESSLASFPIKPLEALKDCFDIYEDISTDSVRPGDRENGRTEGESSGQSGSLPRHYMAENKRSFSGSLISDNAVSPKKIIVDGDRDYLQSKLPAERSYSGPLLYRQKRDTSNISAVDDTSDGTVVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTISPTSLNFTPALLLPPMQCILQQNILQREEIVKLIKYLEQMTGKNPDVSETVTSETLQMPPASSRERELQSQVVHLQQRIDNLAEELEKQKLKNAEFERHMMRNG 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23817061 23828591 - MC04g1638 Mch4g2219 686931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2219 666 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Mch4g2219 666 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2219 666 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Mch4g2219 666 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 657 IPR047173 GO:0043539(InterPro)
Mch4g2219 666 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Mch4g2219 666 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Mch4g2219 666 MobiDBLite consensus disorder prediction 434 460 - -
Mch4g2219 666 Gene3D Transferase(Phosphotransferase) domain 1 97 315 - -
Mch4g2219 666 CDD STKc_OSR1_SPAK 14 277 - -
Mch4g2219 666 MobiDBLite consensus disorder prediction 434 448 - -
Mch4g2219 666 SMART serkin_6 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2219 666 Coils Coil 627 661 - -
Mch4g2219 666 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2219 666 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2219 K08835 - - csv:101205102 1260.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2219 Mch-Chr4:23817061 Mch5g0066 Mch-Chr5:447074 5.91E-107 dispersed
Mch10g1743 Mch-Chr10:17343255 Mch4g2219 Mch-Chr4:23817061 3.10E-169 transposed
Mch11g1051 Mch-Chr11:7308079 Mch4g2219 Mch-Chr4:23817061 1.50E-60 transposed
Mch8g1055 Mch-Chr8:7413828 Mch4g2219 Mch-Chr4:23817061 6.54E-186 transposed
Mch9g2066 Mch-Chr9:21755076 Mch4g2219 Mch-Chr4:23817061 1.31E-56 transposed
Mch3g1570 Mch-Chr3:17718940 Mch4g2219 Mch-Chr4:23817061 2.25E-33 transposed
Mch4g2219 Mch-Chr4:23817061 Mch8g1508 Mch-Chr8:11515694 8.58E-249 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1051 . 1 686 MAP Kinase Kinase Kinase Kinase AT1G53165 62.2 6.8e-216 747.3
Mch11g1051 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 63.0 1.7e-222 769.2
Mch9g2066 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 51.3 4.3e-69 259.6
Mch9g2066 . 1 845 MAP Kinase Kinase Kinase Kinase AT1G69220 57.6 7.7e-243 837.0
Mch11g1051 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.0 6.2e-67 252.7
Mch4g2219 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.1 7.6e-252 866.7
Mch8g1508 . 24 630 MAP Kinase Kinase Kinase Kinase AT5G14720 55.1 7.2e-194 674.1
Mch10g1743 . 9 726 MAP Kinase Kinase Kinase Kinase AT4G24100 63.6 1.3e-241 832.8
Mch10g1743 . 11 727 MAP Kinase Kinase Kinase Kinase AT4G10730 63.9 6.0e-244 840.5
Mch8g1055 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 3.7e-133 472.2
Mch10g1743 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 59.0 9.8e-118 421.0
Mch8g1055 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 6.2e-214 740.7
Mch8g1508 . 30 377 MAP Kinase Kinase Kinase Kinase AT1G79640 67.8 1.5e-143 506.9
Mch4g2219 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 1.7e-104 376.7
Mch8g1508 . 24 350 MAP Kinase Kinase Kinase Kinase AT1G23700 56.1 1.3e-96 350.5
Mch8g1055 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 1.0e-88 324.3
Mch10g1743 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 6.3e-75 278.5
Mch5g0066 . 19 500 MAP Kinase Kinase Kinase Kinase AT4G14480 55.5 3.9e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77361 PF00069 Pkinase 1.30E-60 CL0016 Mch PK