Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2242 TTTTGGATCCGAACCCAGATGGCTCCGAGCTCTGTTGTGGTCACAATTGAGAAGCACAACAGCTTCCCTCTTGTGGAAATCAATGCCTCTGATTCGTTGTTACTTCCCGAGAAGCAGAAGGCTGCCAGTCCGAAACAGCTCACGTGGGTTCTTCTTCTCAAAGCCCACAGAGCTCTGTTTTTCTTCTCGTGGATGGCTTTAACTGTCAAGACTGTGTTTACTTCTGTTAAGAAACGCATTGCTCATGCGGACATTAACGGGGAAAATTCCAAAAACCGAGGGAAATTGTACAGATTCATCATAGCCTTTCTCGCCATTTCCATCGCGGCTTTAATCGTTGAAATCGTCGCCCATTTCAAGAAGTGGAATCTGCGAGTGATTCAGCCATTGGAGCTCGAGGTTCAAGGACTCGTCCAATGGTTTTACGTCTCCTGGACTTCGTTCCGAGTCGATTACATTGCTCCACTGGTACTTATGCTTTCCAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTCGACCGTCTTGTTCTCTGCCTTGGCTGCTTCTGGATCAAATTCAAGAAAATCAAACCCACGATTCAGGAAGATGCTTATGATTTGGAAGACGCTTCGACTTTCCCGATGGTTCTTGTTCAAATCCCAATGTGCAATGAGAGAGAGGTTTATGCACAATCGATTGCTGCTGCTTGTCAGCTTGATTGGCCGAGGAATCGGATTTTGATTCAAGTTCTGGATGATTCAGACGACGGAAATCTTCAACGTTTGATCAAAGAAGAAGTTCTATCATGGAATGAGAAGGGTGTTAAAATAATTTATAGACATAGATTGATCCGAACTGGGTATAAAGCTGGGAATCTCAAGTCTGCCATGGCTTGTGATTATGTTAAAGATTACGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAACCCTGATTTCCTTAAACAAACGATCCCCCATTTCAAGGGAAATCCTCAGCTGGGTCTCGTCCAAGCTCGGTGGGCGTTCGTTAACAAGGACGAAAACTTACTTACGAGGCTCCAAAACATCAACTTGTGTTTCCACTTTGAAGTGGAACAGCAAGTAAATGGGGTTTTCCTGAACTTCTTTGGATTCAATGGAACCGCAGGCGTCTGGAGAGCAAAAGCACTTGAGGAATCAGGTGGCTGGCTCGAGCGAACAACCGTGGAAGATATGGATATTGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTTAAGGTGCTCTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTTCCTTCAATCATTACTTCAAAGATATCAATATGGAAGAAGACCAACTTGATATTTCTGTTCTTTCTGCTGAGAAAACTCATACTTCCCTTTTACTCATTCACTTTGTTTTGCATAATACTTCCATTGACAATGTTCATTCCAGAAGCAGAATTGCCTCTCTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTACTAAACATTCTTCCATCCCCAAAATCCTTCCCCTTCTTGATCCCCTACCTCTTGTTTGAGAACACCATGTCGGTCACGAAGTTCAACGCCATGGTTTCGGGGCTATTCCAGCTCGGAAGTTCCTACGAATGGGTCGTGACAAAGAAGACAGGACGATCATCCGAATCAGACTTCTTAGCACTCGCAGAGCGAGAGTCGAAATATTCGAACGAGGAGAAGATTCTGAGGAGGCATTCGGAGTCGGGGCTCGAGTTGTTGAGCAAACTGAATCAAGAAGAGACGCAAAAGGGTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAGCTTGCTCTTGCTTTTCTGCTGCTCACTGCAGCTGCTAGAAGCTTGCTGTCAGCACATGGAGTTCACTTCTATTTCTTGCTTTTCCAAGGTTTGTCATTCCTGGTGATGGGGTTGGACTTGATTGGTGAGCAAATGAACTGA 2019 44.33 FWIRTQMAPSSVVVTIEKHNSFPLVEINASDSLLLPEKQKAASPKQLTWVLLLKAHRALFFFSWMALTVKTVFTSVKKRIAHADINGENSKNRGKLYRFIIAFLAISIAALIVEIVAHFKKWNLRVIQPLELEVQGLVQWFYVSWTSFRVDYIAPLVLMLSKFCIVLFLIQSLDRLVLCLGCFWIKFKKIKPTIQEDAYDLEDASTFPMVLVQIPMCNEREVYAQSIAAACQLDWPRNRILIQVLDDSDDGNLQRLIKEEVLSWNEKGVKIIYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKQTIPHFKGNPQLGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRAKALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKTGRSSESDFLALAERESKYSNEEKILRRHSESGLELLSKLNQEETQKGSKKKRNKVYRKELALAFLLLTAAARSLLSAHGVHFYFLLFQGLSFLVMGLDLIGEQMN 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23956344 23959009 - MC04g1655 Mch4g2242 686954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2242 672 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 200 427 IPR029044 -
Mch4g2242 672 SUPERFAMILY Nucleotide-diphospho-sugar transferases 210 510 IPR029044 -
Mch4g2242 672 FunFam probable xyloglucan glycosyltransferase 5 202 426 - -
Mch4g2242 672 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 125 671 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Mch4g2242 672 Pfam Glycosyl transferase family group 2 302 508 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2242 K20887 - - csv:101208151 1206.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0635 Mch-Chr11:4093054 Mch4g2242 Mch-Chr4:23956344 0 dispersed
Mch4g2242 Mch-Chr4:23956344 Mch8g0605 Mch-Chr8:4329710 4.14E-302 dispersed
Mch4g2242 Mch-Chr4:23956344 Mch11g0387 Mch-Chr11:2422199 4.95E-303 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g1153 . 220 380 REM Transcription Factor Family AT1G49480 72.7 3.3e-58 221.9
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch11g0635 . 1 696 REM Transcription Factor Family AT2G24630 76.6 0.0e+00 1079.7
Mch4g2242 . 2 673 REM Transcription Factor Family AT2G24630 69.0 9.1e-269 922.9
Mch11g0387 . 1 710 REM Transcription Factor Family AT2G24630 64.3 4.4e-263 904.0
Mch8g0605 . 5 701 REM Transcription Factor Family AT2G24630 65.0 5.5e-258 887.1
Mch9g1064 . 5 695 REM Transcription Factor Family AT2G24630 62.4 1.8e-245 845.5
Mch2g1153 . 220 380 REM Transcription Factor Family AT1G49480 72.7 3.3e-58 221.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33