Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g2245 | ATGGAGTTTCAAGAGGGTTTAATGAAGTTTATGATCCACAGACCCATTAAACACAAATGGGTTTTGGAGAGAGATTCTCCGTCCGTTGCAGTTTCAGAGATAACCAGTAGCCCCAGACGAAAATGGCGGATCTTCAGTAGGTCTTCTTCTTCCCCATTCCCGTCCAAACCCCGACTCAAGGAGATTCCCAAGGAATTGCTCTGCCCTATTTCTGGGTCTTTAATGGCGGACCCTGTAATCGTCTCCTCCGGCCATACTTTCGAAGCCGCCTGTGTTCATGTTTGTAAGGAATTAGGGTTCAAGCCGACCCTATTAGATGGTTCGAAGCCGGATTTCTCCTCTGTAATCCCGAATCTCGCTCTCAAATCCACCATTTTCAATTGGTGCAAGAACTCCTCCTCTGAATCCCCGAAACCCCTCGATTTCTCCTCCGCCGAGAAGCTCGTTCGTAAATTCATGGCGGATCATAGCAAAACCGATGCAGAATTGATTCAAGGGGTTGCTGAGAATCCTGTGGTTCGATTCAACCACGCCGCCACTGAGGTCGCTCATCGGGCCTCTCTGTTTTACTCGAGCTCCGAAGAATCTGTAAGCCCCACCGTTTCGCCTCTGCCCCTTCCTCTCGCGACTCGCCCGAGTTGCTGTTCTTCGTCTTCTTCCTCTGAAATTGAGATCACTAATCTGAACTCCCCCGAAGAAGAAGAGATCATCGCGAAGCTTTCAAGCCCTCAGGTTATTGAGATTGAAGAGGCGGTGATTACGCTAAGAAAAATCACGAGAACTCGCGAGGGCACTAGGGTTCTTCTCTGTACCCCTCAGATTCTCTCGGCTCTCCGATCTCTCGTCGTCTCGAGGTACACCGGCATTCAGGTGAATTCAGTTGCAGCGCTGGTGAATCTGTCTTTGGAGAAGACGAACAAGGTGAAGATCGTACGGTCGGGAATCGTCCCCAATTTGATTGATGTTCTGAAAGGGGGTTCGCCGGAGGTTCAGGAACATGCCTCCGGCGCCATCTTCAGCTTAGCTCTCCACGACGATAACAAGACGGCGATCGGCGTTTTGGGCGCTTTGCCGCCGTTGATTCGGTTGCTGCTGTCCGACTCGGAGCAGACTCGGCATGACTCAGCTCTTGCTCTGTATCACCTCTCGCTGGTTCAGAGCAACCGTTCTAAGCTCGTGAAACTCGGGTCGGTGCCGGTGTTTCTCGGAATGGTGAAATCTGGCCAAATGGCCGGGCGGATTTTGCTGATTCTGTGCAATTTGGCGGCGTGCTTCGAGGGCCGGGCGGCATTGCTGGATTCCGGCGCGGTGGAGTGTTTGGTGGGGATGTTGAAGGAGGACGAGTTGGACTCTGAGTCGACTCGGGAGAGTTGCGTGGCGGTTCTGTTTGGACTGAGTCACGGCGGTTTGAGGTTCAAGGGCCTGGCCAAGACCGCCGGAGCAATGGAGGTTTTCATGGCGGTGGAGAAAACAGGAAGCGAGAGAGCAAAAGAGAAGGCGAAGAGGATGATGGAGATGATGAAAGCCAGAGATGAGGAGGCGGAGGATGTGAATTGGGAGGAATTGCTCGACTCGGGTTGTTTCGGAAGCCGAACTCGGTGTCGACTCGCCGCCGGAATGGACAGGTCCACCGCCAACTCGTCCGAGTTCTGA | 1653 | 53.06 | MEFQEGLMKFMIHRPIKHKWVLERDSPSVAVSEITSSPRRKWRIFSRSSSSPFPSKPRLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVHVCKELGFKPTLLDGSKPDFSSVIPNLALKSTIFNWCKNSSSESPKPLDFSSAEKLVRKFMADHSKTDAELIQGVAENPVVRFNHAATEVAHRASLFYSSSEESVSPTVSPLPLPLATRPSCCSSSSSSEIEITNLNSPEEEEIIAKLSSPQVIEIEEAVITLRKITRTREGTRVLLCTPQILSALRSLVVSRYTGIQVNSVAALVNLSLEKTNKVKIVRSGIVPNLIDVLKGGSPEVQEHASGAIFSLALHDDNKTAIGVLGALPPLIRLLLSDSEQTRHDSALALYHLSLVQSNRSKLVKLGSVPVFLGMVKSGQMAGRILLILCNLAACFEGRAALLDSGAVECLVGMLKEDELDSESTRESCVAVLFGLSHGGLRFKGLAKTAGAMEVFMAVEKTGSERAKEKAKRMMEMMKARDEEAEDVNWEELLDSGCFGSRTRCRLAAGMDRSTANSSEF | 550 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23988548 | 23992402 | - | MC04g1658 | Mch4g2245 | 686957 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g2245 | 550 | Pfam | U-box domain | 62 | 132 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Mch4g2245 | 550 | ProSiteProfiles | U-box domain profile. | 61 | 135 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Mch4g2245 | 550 | Coils | Coil | 497 | 517 | - | - | |
| Mch4g2245 | 550 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 134 | IPR013083 | - | |
| Mch4g2245 | 550 | SMART | Ubox_2 | 65 | 128 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Mch4g2245 | 550 | SMART | arm_5 | 261 | 302 | IPR000225 | GO:0005515(InterPro) | |
| Mch4g2245 | 550 | SMART | arm_5 | 303 | 343 | IPR000225 | GO:0005515(InterPro) | |
| Mch4g2245 | 550 | SMART | arm_5 | 424 | 467 | IPR000225 | GO:0005515(InterPro) | |
| Mch4g2245 | 550 | SMART | arm_5 | 344 | 384 | IPR000225 | GO:0005515(InterPro) | |
| Mch4g2245 | 550 | SUPERFAMILY | RING/U-box | 56 | 134 | - | - | |
| Mch4g2245 | 550 | PANTHER | U BOX DOMAIN-CONTAINING | 49 | 508 | - | - | |
| Mch4g2245 | 550 | Gene3D | - | 229 | 523 | IPR011989 | - | |
| Mch4g2245 | 550 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 355 | 397 | IPR000225 | GO:0005515(InterPro) | |
| Mch4g2245 | 550 | SUPERFAMILY | ARM repeat | 234 | 512 | IPR016024 | - | |
| Mch4g2245 | 550 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 314 | 351 | IPR000225 | GO:0005515(InterPro) | |
| Mch4g2245 | 550 | FunFam | RING-type E3 ubiquitin transferase | 231 | 507 | - | - | |
| Mch4g2245 | 550 | Pfam | Armadillo/beta-catenin-like repeat | 345 | 383 | IPR000225 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g2245 | Mch-Chr4:23988548 | Mch4g2494 | Mch-Chr4:25696194 | 3.70E-10 | dispersed | |
| Mch3g1473 | Mch-Chr3:16955375 | Mch4g2245 | Mch-Chr4:23988548 | 7.77E-100 | wgd | |
| Mch4g2245 | Mch-Chr4:23988548 | Mch6g0178 | Mch-Chr6:1199455 | 3.03E-69 | wgd |
Pathway information