Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2246 ATGGCGTTTCTCCTTCTCCTTCTCTTCTCTGCGCTCTTTCATTCCGCCGCCGCCTCTCTCTCCGCCGACTATTACCGGACTTCCTGCCCTGCGTTCTCCCAGATCATCCGCGACACCGTTACCAACAAGCAGATCACCACCCCCACCACCGCCGCCGCCACGCTCCGCCTCTTCTTCCACGACTGCCTCCCCAACGGCTGCGACGCCTCCGTCCTCATCTCCTCCACCTCCTTCAACGCCGCCGAGCGCGACGCCGACATCAACCTCTCCCTCCCCGGCGACGCCTTCGACCTCGTCGTCCGGGCCAAGACCGCCCTCGAGCTCGCCTGCCCCAACACCGTCTCCTGCGCCGACATCCTCGCCGCCGCAACTCGGGACCTCATCACCATGGTCGGCGGTCCCTATTACACCGTCTTCCTCGGCCGGAAAGACGGCAAGATATCCAGAGCCTCCGCCGTTGAAGGCACGCTCCCCAGACCCACCATGCCGGTGTCTGAGATCATCGGAATTTTCGGCTCCAGAGGATTTTCCGTTCAGGAAATGGTGGCGCTGAGCGGCGCACATTCGATTGGGTTCTCGCATTGCAAGGAGTTCACCTCTGGGATCTTCAATTACAGCAGATCGCCGCCGTACGACAGCCATTACAACCCGAGATTCGCGCAGGGGTTACAGAGGGCATGCGCCGATTACCAGAAGAATCCGACTCTGTCAGTGTTCAACGATATAATGACGCCGAACAAATTCGACAACATGTATTACAAGAATCTGCAGAAGGGATTAGGGCTTTTGAGGTCCGATGGCGGATTGTACAGCGATCCAAGAACGAGGGCGTGGGTGGACAAATACGCGGCGGATGAGAGCGCCTTCTTCGAGGCGTTTTCTCGAGCCATGGAGAAGCTCGGTGGCTATGGCGTCAAGGTCGGGAATCAAGGAGAGATCAGACGCAGGTGCGATGCCTTTAATTGA 966 58.9 MAFLLLLLFSALFHSAAASLSADYYRTSCPAFSQIIRDTVTNKQITTPTTAAATLRLFFHDCLPNGCDASVLISSTSFNAAERDADINLSLPGDAFDLVVRAKTALELACPNTVSCADILAAATRDLITMVGGPYYTVFLGRKDGKISRASAVEGTLPRPTMPVSEIIGIFGSRGFSVQEMVALSGAHSIGFSHCKEFTSGIFNYSRSPPYDSHYNPRFAQGLQRACADYQKNPTLSVFNDIMTPNKFDNMYYKNLQKGLGLLRSDGGLYSDPRTRAWVDKYAADESAFFEAFSRAMEKLGGYGVKVGNQGEIRRRCDAFN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23988966 23989931 + MC04g_new0588 Mch4g2246 686958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2246 321 ProSiteProfiles Plant heme peroxidase family profile. 19 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 SUPERFAMILY Heme-dependent peroxidases 20 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Haem peroxidase superfamily signature 51 65 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Mch4g2246 321 Gene3D Peroxidase, domain 2 158 300 - -
Mch4g2246 321 Pfam Peroxidase 37 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 ProSitePatterns Peroxidases active site signature. 51 62 IPR019794 GO:0004601(InterPro)
Mch4g2246 321 FunFam Peroxidase 23 166 - -
Mch4g2246 321 Gene3D - 23 321 - -
Mch4g2246 321 PANTHER - 4 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 FunFam Peroxidase 158 300 - -
Mch4g2246 321 CDD secretory_peroxidase 20 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 53 73 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 29 48 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Mch4g2246 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1471 Mch-Chr3:16947625 Mch4g2246 Mch-Chr4:23988966 4.61E-136 dispersed
Mch4g2246 Mch-Chr4:23988966 Mch6g0177 Mch-Chr6:1189685 1.26E-134 dispersed
Mch4g2246 Mch-Chr4:23988966 Mch8g1566 Mch-Chr8:12443056 3.35E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2246 K00430 - csv:105435603 535.028