Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2268 CTGTCCGGCAATAGCTTCTCCGGCCCGATCCCGCCGCATATTTGTAAGTGGCTTCCCTATTTGGTTACCTTGGATTTGTCCAACAACCACTTTTCCGGCCCTATTCCGTCTGATCTTGCCGGATGTTCTTATCTGAATTCGTTGATTTTGTCTAACAATGAGCTTTCCGGGACAATACCAGTTGAGCTTTCGAATTTGGGTAGGCTTAGCAAATTTTCTGTTGCAAATAATCAACTCACGGGTACGATTCCCTCATTTTTTGATAAGTTTGGGAAGGAAGATTTTGATGGGAACAGTGACCTATGTGGGGGGCCTGTTGGATCCAAGTGTGGTGGATTGAGCAAGAAGAATCTTGCGATTATTTTAGCTGCGGGTGTGTTTGGGGCTGCGGCTTCTCTGTTGTTAGGTTTTGGATTGTGGTGGTGGTATCACTCAAGAATGAGAATGAAGAAGACATTTGGGGACGGGCTTTGTGGGGATTGGACTGATAGATTGAGAGCCTATAAGCTTGTTCAAGTTTCCTTGTTTCAAAAGCCTCTTGTAAAAGTTAAATTGGCTGATTTGATGGCTGCTACTAACAATTTCAATCCTGAAAATATAATTGTTTCTTCTAGAACTGGGACTACTTATAGAGCTGTTCTACCAGATGGTTCTGTGCTCGCCATAAAGCGGCTCAATACCTGCAAGCTCGGCGAGAAGCTGTTTCAAAAGGAGATGAACCGGTTAGGATCGATAAGGCACCCGAATTTGACCCCCCTTTTGGGGTTCTGTGTTGTAGAAGAGGAAAAGCTCTTGGTTTATAAGTATATGTCTAATGGGACTTTGTTCTCTCTGTTACATGGAAATGTCGAGATATTGGACTGGCCAACTCGGTTTAGGATCGGTTTGGGAGCGGCAAGGGGTCTTGCTTGGCTTCACCATGGATACGACCCTCCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGAAGACTATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTGATGGCCACGGATTCTCACGACAGTAGTTTTGTCAATGGAGATTTAGGGGAACTCGGTTACATTGCACCCGAATATCCGAGCACCATGGTTGCTTCTCTAAAAGGAGATGTTTATGGATTTGGGGTTGTGCTTTTGGAGCTGATCACTGGGCAAAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGTTATAAAGGCAACTTGGTGGATTGGGTTAATCAGCTAAGTAGTTCGGGTCAAATTAAGGATGTTATCGATAAAAATCTTTGTGGAAAAGAGAACGACGAGGAAATCTTACAGTTTCTGAAAATTACAATGAACTGCGTCGTTCCTCGGCCCCGGGACAGGTGGTCTATGTATCAGGTT 1386 44.08 LSGNSFSGPIPPHICKWLPYLVTLDLSNNHFSGPIPSDLAGCSYLNSLILSNNELSGTIPVELSNLGRLSKFSVANNQLTGTIPSFFDKFGKEDFDGNSDLCGGPVGSKCGGLSKKNLAIILAAGVFGAAASLLLGFGLWWWYHSRMRMKKTFGDGLCGDWTDRLRAYKLVQVSLFQKPLVKVKLADLMAATNNFNPENIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFQKEMNRLGSIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLFSLLHGNVEILDWPTRFRIGLGAARGLAWLHHGYDPPFMHQNICSSVILVDEDYDARIMDFGLARLMATDSHDSSFVNGDLGELGYIAPEYPSTMVASLKGDVYGFGVVLLELITGQKPLEVTKAEEGYKGNLVDWVNQLSSSGQIKDVIDKNLCGKENDEEILQFLKITMNCVVPRPRDRWSMYQV 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24196994 24198379 + MC04g1670 Mch4g2268 686980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2268 462 Gene3D Ribonuclease Inhibitor 1 118 IPR032675 -
Mch4g2268 462 SUPERFAMILY Protein kinase-like (PK-like) 172 462 IPR011009 -
Mch4g2268 462 ProSiteProfiles Protein kinase domain profile. 195 462 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2268 462 FunFam Leucine-rich repeat receptor-like protein kinase 20 112 - -
Mch4g2268 462 Gene3D Transferase(Phosphotransferase) domain 1 270 462 - -
Mch4g2268 462 Pfam Leucine Rich Repeat 45 66 IPR001611 GO:0005515(InterPro)
Mch4g2268 462 Pfam Leucine Rich Repeat 69 89 IPR001611 GO:0005515(InterPro)
Mch4g2268 462 Pfam Leucine Rich Repeat 21 42 IPR001611 GO:0005515(InterPro)
Mch4g2268 462 Gene3D Phosphorylase Kinase; domain 1 156 269 - -
Mch4g2268 462 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 158 269 - -
Mch4g2268 462 Pfam Protein tyrosine and serine/threonine kinase 219 403 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2268 462 SUPERFAMILY L domain-like 1 90 - -
Mch4g2268 462 PANTHER RECEPTOR-LIKE PROTEIN 55 1 462 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2268 Mch-Chr4:24196994 Mch9g0975 Mch-Chr9:8127038 1.27E-105 dispersed
Mch4g2268 Mch-Chr4:24196994 Mch9g0491 Mch-Chr9:3621434 2.28E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77363 PF07714 PK_Tyr_Ser-Thr 4.70E-29 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2268 - - - 0.0