Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2286 ATGGGTTTGGCACCTAATGACTCGAAGGTGGAGACATGGATTGAGGGCAAGTCGAGAACAGCCAGCGAGAAGAAGAAGAAGAAGGAAAATGAGTTGGAGGAGGAGACTGGATGTTGGGTTAAGTTGAAGTTCATAGGAAGTTGCATTCCTTCGAGATCAAAGGTTGATAGCTCCCTAAGTGGATCAAAGGTCGATAGCTTCATCAGTGGCACCAGTACTCATTGCGACAGTAAATGTAGACTCGATGAAAAAAGAGAGAGTTTGGCCACTGCATTGGGATCCTCAGCAACTACCGATAATGCTGAAAGTAGTTCGTCCACACCCAAGCTTAGTGCCGAGCTGAAGGTTGCTTCTAAGCTTCGTAAGTTCACTTTTAACGAGCTTAAGTTAGCCACAAGAAATTTCAGACCTGAGAGCCTTCTTGGCGAGGGAGGTTTTGGTTGTGTTTTCAAAGGATGGATTGAGGAGAATGGAACTGCTCCTGCTAAACCTGGAACTGGGCTTACAGTTGCAGTCAAGACTCTTAATCATGATGGTCTTCAAGGTCATAAAGAGTGGATGGCTGAAGTTAACTTCCTTGGTGATCTCGTCCATCCTAATCTTGTTAAGTTGATTGGTTGCTGCATTGAAGATGATCAAAGATTATTGGTTTATGAGTTCATGCCTCGTGGAAGTTTGGAAAACCACCTCTTCAGAAAAGGGCCCTTGCCACTTCCATGGTCCATCAGAATGAAAATTGCGCTTGGTGCTGCTAAAGGCCTCACTTTTCTTCATGAAGAAGCTCAAAGACCAGTGATATATCGTGATTTTAAAACGTCTAATATTTTATTAGATGCGGAATACAATGCTAAACTCTCAGACTTTGGACTTGCAAAAGATGGTCCCGAGGGTGACAAGACTCATGTTTCAACTCGAGTTATGGGAACCTACGGTTATGCAGCTCCAGAATATGTGATGACTGGACATTTGACATCAAAAAGTGACGTCTACAGTTTTGGAGTTGTCTTGCTCGAAATGCTAACTGGTCGAAGATCGATGGATAAAAATAGACCCAATGGGGAGCACAACCTTGTTGAATGGGCTAGACCACTACTTGGGGACAAGAGGAAGTTCTACCGGCTGATAGATCCCCGGCTCGAATGTCACTTCTCGATCAAAGGTGCACAAAAAGCTGCAGAGCTTGCAGCTCACTGCCTCAGTAGAGATCCTAAAGCCAGGCCTGTGATGAGCGAAGTTGTTGAAACTTTAAAACCTTTGCCAAACCTCAAGGACATGGCGAGTTCTTCCTATTACTTCCAGACCATGCAAGCAGAGCGTGCCAGGTCCAACCCCAGTGCTAAAAGTGTAGTCCGCACGCAGTCCATGTTTGTGGCAAGGAACGGGCAACACATTAGAAGCTTATCAAGTCCAAATGGTCCTCATGCTTCTCCATATAATTATCCTCACCAGTCGCCAAAACCCGACAGGAGATAA 1473 45.08 MGLAPNDSKVETWIEGKSRTASEKKKKKENELEEETGCWVKLKFIGSCIPSRSKVDSSLSGSKVDSFISGTSTHCDSKCRLDEKRESLATALGSSATTDNAESSSSTPKLSAELKVASKLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPAKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLGDLVHPNLVKLIGCCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRMKIALGAAKGLTFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPLLGDKRKFYRLIDPRLECHFSIKGAQKAAELAAHCLSRDPKARPVMSEVVETLKPLPNLKDMASSSYYFQTMQAERARSNPSAKSVVRTQSMFVARNGQHIRSLSSPNGPHASPYNYPHQSPKPDRR 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24324494 24329768 + MC04g1685 Mch4g2286 686998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2286 490 FunFam Probable serine/threonine-protein kinase PBL8 221 437 - -
Mch4g2286 490 ProSiteProfiles Protein kinase domain profile. 135 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2286 490 MobiDBLite consensus disorder prediction 460 490 - -
Mch4g2286 490 MobiDBLite consensus disorder prediction 460 478 - -
Mch4g2286 490 SUPERFAMILY Protein kinase-like (PK-like) 112 416 IPR011009 -
Mch4g2286 490 MobiDBLite consensus disorder prediction 12 33 - -
Mch4g2286 490 Gene3D Transferase(Phosphotransferase) domain 1 221 440 - -
Mch4g2286 490 FunFam Serine/threonine-protein kinase BIK1 102 220 - -
Mch4g2286 490 MobiDBLite consensus disorder prediction 1 33 - -
Mch4g2286 490 ProSitePatterns Protein kinases ATP-binding region signature. 141 173 IPR017441 GO:0005524(InterPro)
Mch4g2286 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2286 490 Gene3D Phosphorylase Kinase; domain 1 110 220 - -
Mch4g2286 490 CDD STKc_IRAK 141 419 - -
Mch4g2286 490 PANTHER OS01G0588500 PROTEIN-RELATED 105 420 IPR050823 -
Mch4g2286 490 Pfam Protein tyrosine and serine/threonine kinase 139 416 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2158 Mch-Chr4:23449901 Mch4g2286 Mch-Chr4:24324494 1.72E-135 dispersed
Mch4g2286 Mch-Chr4:24324494 Mch8g3060 Mch-Chr8:33084525 6.74E-170 dispersed
Mch5g2004 Mch-Chr5:19712526 Mch4g2286 Mch-Chr4:24324494 1.17E-61 transposed
Mch4g2286 Mch-Chr4:24324494 Mch9g2164 Mch-Chr9:22324118 7.26E-241 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77364 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2286 - - - 0.0