Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g2288 | ATGAAAAGAAATCAGATCACGAACATGGAAATATTCTCCATATGGGACTATAATGGCAACATTGCATATGAAGACATCATAGAAGCAACAGAGGACTTTCACATCAAATATTGCATTGGCACCGGCGGATATGGCAGTGTTTACAGAGCAGTACTTCCAAATGGCAAAGTCGTAGCTGTAAAGAAACTCCACACCCATGAGGCCCAGCAGATAACCCTTTTCAACAGTTTTCAGAATGAGGTTGAAATGTTAAAGGAGATAAGGCACAAGAACATCGTTAAACTCCATGGATATTGCCTCCACAATCGTTGCATGTTTCTCATTTACCAATACATGGAGAGGAGAAGCCTGTTTTTGGCGTTGAGCAATGATTCAGAAGCAGTGGAATTGGATTGGAATAAGAGGCTAAGCATCATTACCAGAGTCGCACATGCTTTGTCCTATATTCATCACCATTGCATTAAACCCATCATTCATCGAGATGTTACAACAAGTAACATACTTTTAGACTCAAAGCTTGAGGCTTTTCTATCAGATTTTGGCATCGCAAGATTGCTTGATCTTGAATCATCCTATCATACCACAGTTGGCGGCACTTGTGGCTATATTGCTCCAGGTGAAACCAACAATTTTAAACTTCTTATTTTATTTTCTTTATATTAA | 663 | 39.06 | MKRNQITNMEIFSIWDYNGNIAYEDIIEATEDFHIKYCIGTGGYGSVYRAVLPNGKVVAVKKLHTHEAQQITLFNSFQNEVEMLKEIRHKNIVKLHGYCLHNRCMFLIYQYMERRSLFLALSNDSEAVELDWNKRLSIITRVAHALSYIHHHCIKPIIHRDVTTSNILLDSKLEAFLSDFGIARLLDLESSYHTTVGGTCGYIAPGETNNFKLLILFSLY | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 24335316 | 24336241 | - | MC04g_new0603 | Mch4g2288 | 687000 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g2288 | 220 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 205 | IPR011009 | - | |
| Mch4g2288 | 220 | ProSitePatterns | Protein kinases ATP-binding region signature. | 39 | 62 | IPR017441 | GO:0005524(InterPro) | |
| Mch4g2288 | 220 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 111 | - | - | |
| Mch4g2288 | 220 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 7 | 205 | IPR051420 | - | |
| Mch4g2288 | 220 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 1 | 111 | - | - | |
| Mch4g2288 | 220 | Pfam | Protein kinase domain | 34 | 205 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch4g2288 | 220 | Gene3D | Transferase(Phosphotransferase) domain 1 | 112 | 211 | - | - | |
| Mch4g2288 | 220 | ProSiteProfiles | Protein kinase domain profile. | 33 | 220 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch4g2288 | 220 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 157 | 169 | IPR008266 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g2288 | Mch-Chr4:24335316 | Mch6g2612 | Mch-Chr6:27930544 | 3.87E-56 | dispersed | |
| Mch4g2287 | Mch-Chr4:24329816 | Mch4g2288 | Mch-Chr4:24335316 | 2.73E-118 | tandem | |
| Mch4g2288 | Mch-Chr4:24335316 | Mch4g2289 | Mch-Chr4:24340755 | 3.16E-133 | tandem |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77366 | PF00069 | Pkinase | 4.20E-36 | CL0016 | Mch | PK |
Pathway information