Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2291 ATGGCCTCCCCCCACTCCCATAGCTTCATGTTCCAATCACGCGCCGCCACGGACCACCAAGACTTCGTTCCGTCCTCCTCCTTCAACGCCATCCCCTCCTGCCCTCCTCACCTCTACTTTCACGATGGAGTGGTGCCGTTTATGATGAAGAGATCGATGTCGTTTTCGGGAGTGGAGAACGGGTGCGAGGAGGTGAACGGGGAGGAGGGGTTGTCGGACGACGGATCGGCGCTGGGGGAGAAGAAGAAGAGGCTGAATTTGGAGCAGGTGAAGGCTTTGGAGAAGAGCTTTGAGGTGGGGAATAAGCTTGAGCCGGAGAGGAAAATGCAGCTGGCCAAGGCGTTGGGGCTGCAGCCGAGGCAGATTGCTATTTGGTTTCAGAACAGAAGGGCCAGGTGGAAAACGAAGCAATTGGAGAGAGATTACGAGGTGTTGAAGAAACAGTTTGAATCTCTAAAGGCTGACAACGATGTACTTCAAGCTCAAAATTCCAAACTCCATGCACAGTTATTAGCACTAAAAACGAAAGACTCCGGCGAGACGGCAGCCGGCGGCGGCGCCACCCTGAAAAAGGAAAACGAAGGCGGTTGTTGGAGCAGCGACAATAGTTGCGACATCAACCTCGAGATGTCAAGGACACAGCCAATTACGACCAACGGCGGCGGTCGAGGATGCTCCCAGCCGGGCATTAAAGAGCTGTTCCCATCGGCGGCGTCGTTCCGATCCGCCGCCATAACGCAGCTGCTTCAGCAGGGGTCGTCCACAAGATCAGGCGTGGAGCATCACCCGCAGGTGATTCAAGAAGAAAGCTTCTCCCATATGTTCAATGGAATCGAAGAACAACAACAATCTGCAGCAGCTGGGTTTTGGCCATGGACTTCGGATCAAAGCACCCATTTTCATTAA 906 53.97 MASPHSHSFMFQSRAATDHQDFVPSSSFNAIPSCPPHLYFHDGVVPFMMKRSMSFSGVENGCEEVNGEEGLSDDGSALGEKKKRLNLEQVKALEKSFEVGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFESLKADNDVLQAQNSKLHAQLLALKTKDSGETAAGGGATLKKENEGGCWSSDNSCDINLEMSRTQPITTNGGGRGCSQPGIKELFPSAASFRSAAITQLLQQGSSTRSGVEHHPQVIQEESFSHMFNGIEEQQQSAAAGFWPWTSDQSTHFH 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24361379 24363948 - MC04g1687 Mch4g2291 687003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2291 301 Pfam Homeodomain 81 134 IPR001356 GO:0003677(InterPro)
Mch4g2291 301 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677(InterPro)
Mch4g2291 301 SUPERFAMILY Homeodomain-like 76 138 IPR009057 -
Mch4g2291 301 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch4g2291 301 Gene3D - 74 144 - -
Mch4g2291 301 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677(InterPro)
Mch4g2291 301 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677(InterPro)
Mch4g2291 301 FunFam Homeobox-leucine zipper protein ATHB-13 73 140 - -
Mch4g2291 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 224 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Mch4g2291 301 SMART HOX_1 79 140 IPR001356 GO:0003677(InterPro)
Mch4g2291 301 Pfam Homeobox associated leucine zipper 136 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2291 301 Coils Coil 128 169 - -
Mch4g2291 301 CDD homeodomain 81 137 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2291 Mch-Chr4:24361379 Mch8g1526 Mch-Chr8:11895404 5.06E-26 dispersed
Mch1g1396 Mch-Chr1:15826425 Mch4g2291 Mch-Chr4:24361379 4.60E-30 transposed
Mch3g1518 Mch-Chr3:17314286 Mch4g2291 Mch-Chr4:24361379 2.81E-29 wgd
Mch4g2291 Mch-Chr4:24361379 Mch9g2152 Mch-Chr9:22247913 4.14E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43262 PF00046 Homeodomain 2.20E-15 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2291 K09338 - csv:101212093 494.967