Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2304 ATGGATTTAGCCCCTGCCTCTGCCATCACTACTAGCAGTAACACCAAATCTCCTGACGCCGACTGTGATACTCCCACTCGGATCCAGCCCTCTTCGGCCAAGTCTCTGCCCTTCACCAACGGCGTACTGAAGCGCCACCACAGCCACGCCCGTCAACCGGCGGCGGCGCTACCCCAACCGCCGGTGGTGGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCAGTTTGGGAGCCCACGCGTTGGATGGGTGTGGGGAGTTTATGCCGTCTCCATCCGCTACGCCCACTGATCCCACGTCGCTCAAGTGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGCGACCCGGAGGACCCAATCTCGACTCTGGCCATCAACACGGCGGCGACACATGTGATCGAGTACCAGCCGCACCACCGCCACCACCCGCCGCCTCCGCCCGTGGGGAACCGGAGCCCGAATTCGGCGTCGCCGCCGCCGATCTCGTCGTCGTACTACCCATCCGCGCCGCACATGCTGCTGGCGCTGTCGACTGGGTTGTCGGGGCTGCCGCCGGAAAACAATGCGCACACGAATTCCGCGAGCCCACACGCGCGGAAACGGTTCAGGACCAAATTCAGCAACGAGCAGAAGGAAAAAATGCTCCAATTCGCGGAAAAAGTGGGGTGGAAAATGCAAAAACGAGACGACGATTTAGTCCACGAATTTTGCAATCAAGTGGGTGTCGAAAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCCGGCGACTCCAATGGCACCACCACCACCACAACCACCACCGCCGCAGCCGCCGCCACCGTCCCCGCCGCCGCCAATAACAACAACAACTACGAAGATGGTGAATTACATATGAATGTTGGCTCAAATGGGTCATCTTCTTCTTCT 936 58.87 MDLAPASAITTSSNTKSPDADCDTPTRIQPSSAKSLPFTNGVLKRHHSHARQPAAALPQPPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAATHVIEYQPHHRHHPPPPPVGNRSPNSASPPPISSSYYPSAPHMLLALSTGLSGLPPENNAHTNSASPHARKRFRTKFSNEQKEKMLQFAEKVGWKMQKRDDDLVHEFCNQVGVERGVLKVWMHNNKNTMGKKPGDSNGTTTTTTTTAAAAATVPAAANNNNNYEDGELHMNVGSNGSSSSS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24480333 24481268 - MC04g1699 Mch4g2304 687016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2304 312 Gene3D - 187 262 - -
Mch4g2304 312 MobiDBLite consensus disorder prediction 1 38 - -
Mch4g2304 312 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 117 IPR006456 -
Mch4g2304 312 NCBIfam homeobox domain, ZF-HD class 201 258 IPR006455 -
Mch4g2304 312 SUPERFAMILY Homeodomain-like 189 262 IPR009057 -
Mch4g2304 312 MobiDBLite consensus disorder prediction 257 312 - -
Mch4g2304 312 MobiDBLite consensus disorder prediction 260 312 - -
Mch4g2304 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 259 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch4g2304 312 MobiDBLite consensus disorder prediction 183 197 - -
Mch4g2304 312 MobiDBLite consensus disorder prediction 180 202 - -
Mch4g2304 312 MobiDBLite consensus disorder prediction 138 166 - -
Mch4g2304 312 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Mch4g2304 312 FunFam Zinc-finger homeodomain protein 2 188 262 - -
Mch4g2304 312 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2304 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1562 Mch-Chr3:17648051 Mch4g2304 Mch-Chr4:24480333 6.61E-36 dispersed
Mch4g2304 Mch-Chr4:24480333 Mch8g1659 Mch-Chr8:14154607 1.56E-79 dispersed
Mch4g2303 Mch-Chr4:24466624 Mch4g2304 Mch-Chr4:24480333 3.01E-15 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43267 PF04770 ZF-HD_dimer 8.20E-29 No_clan Mch TF