Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2304 ATGGATTTAGCCCCTGCCTCTGCCATCACTACTAGCAGTAACACCAAATCTCCTGACGCCGACTGTGATACTCCCACTCGGATCCAGCCCTCTTCGGCCAAGTCTCTGCCCTTCACCAACGGCGTACTGAAGCGCCACCACAGCCACGCCCGTCAACCGGCGGCGGCGCTACCCCAACCGCCGGTGGTGGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCAGTTTGGGAGCCCACGCGTTGGATGGGTGTGGGGAGTTTATGCCGTCTCCATCCGCTACGCCCACTGATCCCACGTCGCTCAAGTGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGCGACCCGGAGGACCCAATCTCGACTCTGGCCATCAACACGGCGGCGACACATGTGATCGAGTACCAGCCGCACCACCGCCACCACCCGCCGCCTCCGCCCGTGGGGAACCGGAGCCCGAATTCGGCGTCGCCGCCGCCGATCTCGTCGTCGTACTACCCATCCGCGCCGCACATGCTGCTGGCGCTGTCGACTGGGTTGTCGGGGCTGCCGCCGGAAAACAATGCGCACACGAATTCCGCGAGCCCACACGCGCGGAAACGGTTCAGGACCAAATTCAGCAACGAGCAGAAGGAAAAAATGCTCCAATTCGCGGAAAAAGTGGGGTGGAAAATGCAAAAACGAGACGACGATTTAGTCCACGAATTTTGCAATCAAGTGGGTGTCGAAAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCCGGCGACTCCAATGGCACCACCACCACCACAACCACCACCGCCGCAGCCGCCGCCACCGTCCCCGCCGCCGCCAATAACAACAACAACTACGAAGATGGTGAATTACATATGAATGTTGGCTCAAATGGGTCATCTTCTTCTTCT 936 58.87 MDLAPASAITTSSNTKSPDADCDTPTRIQPSSAKSLPFTNGVLKRHHSHARQPAAALPQPPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAATHVIEYQPHHRHHPPPPPVGNRSPNSASPPPISSSYYPSAPHMLLALSTGLSGLPPENNAHTNSASPHARKRFRTKFSNEQKEKMLQFAEKVGWKMQKRDDDLVHEFCNQVGVERGVLKVWMHNNKNTMGKKPGDSNGTTTTTTTTAAAAATVPAAANNNNNYEDGELHMNVGSNGSSSSS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24480333 24481268 - MC04g1699 Mch4g2304 687016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2304 312 Gene3D - 187 262 - -
Mch4g2304 312 MobiDBLite consensus disorder prediction 1 38 - -
Mch4g2304 312 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 65 117 IPR006456 -
Mch4g2304 312 NCBIfam homeobox domain, ZF-HD class 201 258 IPR006455 -
Mch4g2304 312 SUPERFAMILY Homeodomain-like 189 262 IPR009057 -
Mch4g2304 312 MobiDBLite consensus disorder prediction 257 312 - -
Mch4g2304 312 MobiDBLite consensus disorder prediction 260 312 - -
Mch4g2304 312 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 259 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch4g2304 312 MobiDBLite consensus disorder prediction 183 197 - -
Mch4g2304 312 MobiDBLite consensus disorder prediction 180 202 - -
Mch4g2304 312 MobiDBLite consensus disorder prediction 138 166 - -
Mch4g2304 312 Pfam ZF-HD protein dimerisation region 64 118 IPR006456 -
Mch4g2304 312 FunFam Zinc-finger homeodomain protein 2 188 262 - -
Mch4g2304 312 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 66 117 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1562 Mch-Chr3:17648051 Mch4g2304 Mch-Chr4:24480333 6.61E-36 dispersed
Mch4g2304 Mch-Chr4:24480333 Mch8g1659 Mch-Chr8:14154607 1.56E-79 dispersed
Mch4g2303 Mch-Chr4:24466624 Mch4g2304 Mch-Chr4:24480333 3.01E-15 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43267 PF04770 ZF-HD_dimer 8.20E-29 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2304 - - - 0.0