Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g2304 | ATGGATTTAGCCCCTGCCTCTGCCATCACTACTAGCAGTAACACCAAATCTCCTGACGCCGACTGTGATACTCCCACTCGGATCCAGCCCTCTTCGGCCAAGTCTCTGCCCTTCACCAACGGCGTACTGAAGCGCCACCACAGCCACGCCCGTCAACCGGCGGCGGCGCTACCCCAACCGCCGGTGGTGGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCAGTTTGGGAGCCCACGCGTTGGATGGGTGTGGGGAGTTTATGCCGTCTCCATCCGCTACGCCCACTGATCCCACGTCGCTCAAGTGCGCCGCGTGCGGCTGCCACCGCAACTTCCACCGCCGCGACCCGGAGGACCCAATCTCGACTCTGGCCATCAACACGGCGGCGACACATGTGATCGAGTACCAGCCGCACCACCGCCACCACCCGCCGCCTCCGCCCGTGGGGAACCGGAGCCCGAATTCGGCGTCGCCGCCGCCGATCTCGTCGTCGTACTACCCATCCGCGCCGCACATGCTGCTGGCGCTGTCGACTGGGTTGTCGGGGCTGCCGCCGGAAAACAATGCGCACACGAATTCCGCGAGCCCACACGCGCGGAAACGGTTCAGGACCAAATTCAGCAACGAGCAGAAGGAAAAAATGCTCCAATTCGCGGAAAAAGTGGGGTGGAAAATGCAAAAACGAGACGACGATTTAGTCCACGAATTTTGCAATCAAGTGGGTGTCGAAAGAGGGGTTCTCAAAGTTTGGATGCATAACAACAAGAACACCATGGGAAAAAAGCCCGGCGACTCCAATGGCACCACCACCACCACAACCACCACCGCCGCAGCCGCCGCCACCGTCCCCGCCGCCGCCAATAACAACAACAACTACGAAGATGGTGAATTACATATGAATGTTGGCTCAAATGGGTCATCTTCTTCTTCT | 936 | 58.87 | MDLAPASAITTSSNTKSPDADCDTPTRIQPSSAKSLPFTNGVLKRHHSHARQPAAALPQPPVVVTYKECLKNHAASLGAHALDGCGEFMPSPSATPTDPTSLKCAACGCHRNFHRRDPEDPISTLAINTAATHVIEYQPHHRHHPPPPPVGNRSPNSASPPPISSSYYPSAPHMLLALSTGLSGLPPENNAHTNSASPHARKRFRTKFSNEQKEKMLQFAEKVGWKMQKRDDDLVHEFCNQVGVERGVLKVWMHNNKNTMGKKPGDSNGTTTTTTTTAAAAATVPAAANNNNNYEDGELHMNVGSNGSSSSS | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24480333 | 24481268 | - | MC04g1699 | Mch4g2304 | 687016 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g2304 | 312 | Gene3D | - | 187 | 262 | - | - | |
Mch4g2304 | 312 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Mch4g2304 | 312 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 65 | 117 | IPR006456 | - | |
Mch4g2304 | 312 | NCBIfam | homeobox domain, ZF-HD class | 201 | 258 | IPR006455 | - | |
Mch4g2304 | 312 | SUPERFAMILY | Homeodomain-like | 189 | 262 | IPR009057 | - | |
Mch4g2304 | 312 | MobiDBLite | consensus disorder prediction | 257 | 312 | - | - | |
Mch4g2304 | 312 | MobiDBLite | consensus disorder prediction | 260 | 312 | - | - | |
Mch4g2304 | 312 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 46 | 259 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Mch4g2304 | 312 | MobiDBLite | consensus disorder prediction | 183 | 197 | - | - | |
Mch4g2304 | 312 | MobiDBLite | consensus disorder prediction | 180 | 202 | - | - | |
Mch4g2304 | 312 | MobiDBLite | consensus disorder prediction | 138 | 166 | - | - | |
Mch4g2304 | 312 | Pfam | ZF-HD protein dimerisation region | 64 | 118 | IPR006456 | - | |
Mch4g2304 | 312 | FunFam | Zinc-finger homeodomain protein 2 | 188 | 262 | - | - | |
Mch4g2304 | 312 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 66 | 117 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g1562 | Mch-Chr3:17648051 | Mch4g2304 | Mch-Chr4:24480333 | 6.61E-36 | dispersed | |
Mch4g2304 | Mch-Chr4:24480333 | Mch8g1659 | Mch-Chr8:14154607 | 1.56E-79 | dispersed | |
Mch4g2303 | Mch-Chr4:24466624 | Mch4g2304 | Mch-Chr4:24480333 | 3.01E-15 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43267 | PF04770 | ZF-HD_dimer | 8.20E-29 | No_clan | Mch | TF |
Pathway information
