Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2319 ATGGCTAATTCATTGGGAATAATCCTGCTGCTGGGTTTTTTATGGATGGTCTCGCGTGTTAATGGCGATTATGGCGGTTGGATCAGCGCTCATGCCACTTTCTATGGAGGAAGTGATGCGTCCGGGACAATGGGAGGGGCTTGTGGGTACGGGAATTTGTATAGCCAAGGGTACGGGACCAACACTGCGGCGCTGAGCACGGCGCTGTTCGACAACGGGCTGAGCTGCGGCGCTTGCTTTGAGCTGCGGTGCGTTAACGATCCCCAGTGGTGCCTCCCCGGCACCATCGTGGTCACCGCCACAAACTTCTGCCCTCCTGGCGGCTGCTGCGACCCTCCCAACCACCACTTCGATCTCTCCCAGCCCATCTTCCAACACATTGCTCAATACCGGGCTGGAATTATCCCCGTCGCATATCGAAGGGTGAGGTGCAGAAGGAGCGGGGGAATAAGGTTCACGATAAACGGGCATTCATATTTCAATCTGGTGCTGGTCACGAACGTGGGCGGCGCCGGAGACATCCACGCGGTGGCGATAAAGGGGTCGAAAACACGGTGGCAGCCGATGTCAAGAAATTGGGGGCAGAATTGGCAATCAAACTCTTATCTGAATGGGCAGAGCCTTTCGTTTCTGGTGACGGCCAGCGACGGACGACAAGTGCTGTCCTACAACGTTGCTCCGTCGGGCTGGTCTTTCGGACAGACTTATGTCGGCGGACAGTTCCGCTATTAA 732 56.15 MANSLGIILLLGFLWMVSRVNGDYGGWISAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCLPGTIVVTATNFCPPGGCCDPPNHHFDLSQPIFQHIAQYRAGIIPVAYRRVRCRRSGGIRFTINGHSYFNLVLVTNVGGAGDIHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRQVLSYNVAPSGWSFGQTYVGGQFRY 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24548151 24549677 - MC04g_new0615 Mch4g2319 687031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2319 243 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 PRINTS Expansin signature 148 160 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 PRINTS Expansin signature 160 181 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 PRINTS Expansin signature 124 137 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 PRINTS Expansin signature 107 124 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 SUPERFAMILY PHL pollen allergen 146 237 IPR036749 -
Mch4g2319 243 Gene3D - 149 241 IPR036749 -
Mch4g2319 243 PANTHER EXPANSIN-A15 8 241 IPR002963 GO:0009664(InterPro)
Mch4g2319 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 149 IPR007112 -
Mch4g2319 243 SUPERFAMILY Barwin-like endoglucanases 9 167 IPR036908 -
Mch4g2319 243 FunFam Expansin 17 145 - -
Mch4g2319 243 CDD DPBB_EXPA_N 26 144 - -
Mch4g2319 243 Pfam Lytic transglycolase 62 139 IPR009009 -
Mch4g2319 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576(InterPro)
Mch4g2319 243 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Mch4g2319 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576(InterPro)
Mch4g2319 243 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Mch4g2319 243 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Mch4g2319 243 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Mch4g2319 243 FunFam Expansin 149 241 - -
Mch4g2319 243 Pfam Expansin C-terminal domain 150 227 IPR007117 -
Mch4g2319 243 Gene3D - 16 145 IPR036908 -
Mch4g2319 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 238 IPR007117 -
Mch4g2319 243 SMART dpbb_1 62 139 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2319 Mch-Chr4:24548151 Mch9g1387 Mch-Chr9:16250690 1.15E-132 dispersed
Mch6g2139 Mch-Chr6:23785298 Mch4g2319 Mch-Chr4:24548151 6.10E-15 transposed
Mch3g1733 Mch-Chr3:18778987 Mch4g2319 Mch-Chr4:24548151 2.44E-131 wgd
Mch4g2319 Mch-Chr4:24548151 Mch6g0242 Mch-Chr6:1592357 9.70E-126 wgd
Mch4g2319 Mch-Chr4:24548151 Mch8g2460 Mch-Chr8:27539492 7.11E-129 wgd
Mch4g2319 Mch-Chr4:24548151 Mch9g2116 Mch-Chr9:22063783 1.39E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2319 K20628 - csv:101220358 482.256