Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2348 ATGGCGAAGAAGGAAGACTCTGCCAGAGCTCCGCTGCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCCATGGAGGCCTTCTTCTCCGGCGGACCTACCGGGGTTAGCCCTGGCCCTATGACGCTCGTCTCCAGCTTCTTCGCCGATGGTGCCGTTGACTCTCCCTCCTTCTCTCAGCTTCTCGCCGGAGCCATGGGGTCGCCGATGGCTATGGGTTTCTTGGGGAGCGGGTCCACCCCCAATTATTACGCCAAGGATGGGGGCGCCTCCGAGATGGAATTCGGCTTGAACAAGCACACCAAACCGCTCAATTTGGTGGTTGCTCGCTCTCCTCTGTTCACCGTCCCGCCTGGCCTCTCCCCATCCGGATTGCTTAATTCGCCGGGGTTTTTTCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCGGCACTGGCGCATTCTCATATGCATATGCAGCAAGCTGAGTATCAACATTCTTCGGTGCCAGCTCCTACAGAATCGTTGAGACGTGATCCATCATTTACTCTCGATGAACCATCTCAACAGTCAATATTACCCTCTACATCAGACACAAAAAGTTTCATTGCGGAATCAACAGAGGTCTCTCATTCTGATAGAAAATATCAGCCTCCTCCTCCTTCCCATGCCTCTGATAAACCTGCTGATGATGGCTATAACTGGCGTAAATATGGGCAGAAGCTGGTTAAGGGCAGTGAATTTCCACGAAGCTATTACAAATGCACACATTTGAATTGCCCCGTCAAGAAGAAGATCGAGCGTTCACCTGATGGTCAAATAACTGAAATTATTTACAAAGGCCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCTAGAGATAATAGTGAACCAACTGGGTGTACAAATTCTTCAATGAAGCTTGAATACGGTTCGCAAAATCAAGCTGGAAATTTTAACAAGTCAAGTGAAAACGTGCAATTAGGGTCTAGTGACAGTGAAGAACAAGCTGATACAGAGGTAACAGATGACAGAGGTGAAGATGAGCCAAATCCAAAGAGGCAGAACATCGATGCAGGGACATCTGCTGTTGCTTTGTCACATAAGACGCTCACAGAACCAAAAATCATTGTTCAAACGAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACCAGTGCCGGGTGTAACGTGCGGAAGCATGTCGAGAGGTCTTCAACAGACTCAAAAGCTGTTGTAACTACATACGAGGGGAAACACAACCACGATGTTCCTGCAGCCAGAAACAGCAGCCACCACACAGTCAACAATACTGTACCGCAGATCAAACCACATAAAGTTGTAGCTCAGAAACACCCATTACTTAAAGAGAGGGAATTCGGAACCAATGACCAGAGACCTGCTGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1521 49.11 MAKKEDSARAPLQRPTITLPPRPSMEAFFSGGPTGVSPGPMTLVSSFFADGAVDSPSFSQLLAGAMGSPMAMGFLGSGSTPNYYAKDGGASEMEFGLNKHTKPLNLVVARSPLFTVPPGLSPSGLLNSPGFFPPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSSVPAPTESLRRDPSFTLDEPSQQSILPSTSDTKSFIAESTEVSHSDRKYQPPPPSHASDKPADDGYNWRKYGQKLVKGSEFPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPTGCTNSSMKLEYGSQNQAGNFNKSSENVQLGSSDSEEQADTEVTDDRGEDEPNPKRQNIDAGTSAVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEREFGTNDQRPAVLRLKEEQITV 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24759190 24764468 - MC04g1727 Mch4g2348 687060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2348 506 SUPERFAMILY WRKY DNA-binding domain 230 291 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 MobiDBLite consensus disorder prediction 185 209 - -
Mch4g2348 506 MobiDBLite consensus disorder prediction 1 33 - -
Mch4g2348 506 MobiDBLite consensus disorder prediction 300 340 - -
Mch4g2348 506 FunFam WRKY transcription factor 33 379 445 - -
Mch4g2348 506 ProSiteProfiles WRKY domain profile. 387 452 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 163 463 IPR044810 GO:0003700(InterPro)
Mch4g2348 506 SMART WRKY_cls 392 451 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 SMART WRKY_cls 232 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 MobiDBLite consensus disorder prediction 283 371 - -
Mch4g2348 506 SUPERFAMILY WRKY DNA-binding domain 384 452 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 ProSiteProfiles WRKY domain profile. 227 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 MobiDBLite consensus disorder prediction 160 236 - -
Mch4g2348 506 MobiDBLite consensus disorder prediction 163 177 - -
Mch4g2348 506 Gene3D WRKY domain 224 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 Gene3D WRKY domain 377 453 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 FunFam WRKY transcription factor 223 292 - -
Mch4g2348 506 Pfam WRKY DNA -binding domain 393 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch4g2348 506 Pfam WRKY DNA -binding domain 233 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2348 Mch-Chr4:24759190 Mch6g1412 Mch-Chr6:12571243 2.25E-65 dispersed
Mch4g0341 Mch-Chr4:2123975 Mch4g2348 Mch-Chr4:24759190 5.91E-64 transposed
Mch2g0805 Mch-Chr2:5538629 Mch4g2348 Mch-Chr4:24759190 9.64E-63 wgd
Mch4g2348 Mch-Chr4:24759190 Mch9g2095 Mch-Chr9:21929943 2.10E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43271 PF03106 WRKY 3.20E-25 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2348 - - - 0.0