Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g2348 | ATGGCGAAGAAGGAAGACTCTGCCAGAGCTCCGCTGCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCCATGGAGGCCTTCTTCTCCGGCGGACCTACCGGGGTTAGCCCTGGCCCTATGACGCTCGTCTCCAGCTTCTTCGCCGATGGTGCCGTTGACTCTCCCTCCTTCTCTCAGCTTCTCGCCGGAGCCATGGGGTCGCCGATGGCTATGGGTTTCTTGGGGAGCGGGTCCACCCCCAATTATTACGCCAAGGATGGGGGCGCCTCCGAGATGGAATTCGGCTTGAACAAGCACACCAAACCGCTCAATTTGGTGGTTGCTCGCTCTCCTCTGTTCACCGTCCCGCCTGGCCTCTCCCCATCCGGATTGCTTAATTCGCCGGGGTTTTTTCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCGGCACTGGCGCATTCTCATATGCATATGCAGCAAGCTGAGTATCAACATTCTTCGGTGCCAGCTCCTACAGAATCGTTGAGACGTGATCCATCATTTACTCTCGATGAACCATCTCAACAGTCAATATTACCCTCTACATCAGACACAAAAAGTTTCATTGCGGAATCAACAGAGGTCTCTCATTCTGATAGAAAATATCAGCCTCCTCCTCCTTCCCATGCCTCTGATAAACCTGCTGATGATGGCTATAACTGGCGTAAATATGGGCAGAAGCTGGTTAAGGGCAGTGAATTTCCACGAAGCTATTACAAATGCACACATTTGAATTGCCCCGTCAAGAAGAAGATCGAGCGTTCACCTGATGGTCAAATAACTGAAATTATTTACAAAGGCCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCTAGAGATAATAGTGAACCAACTGGGTGTACAAATTCTTCAATGAAGCTTGAATACGGTTCGCAAAATCAAGCTGGAAATTTTAACAAGTCAAGTGAAAACGTGCAATTAGGGTCTAGTGACAGTGAAGAACAAGCTGATACAGAGGTAACAGATGACAGAGGTGAAGATGAGCCAAATCCAAAGAGGCAGAACATCGATGCAGGGACATCTGCTGTTGCTTTGTCACATAAGACGCTCACAGAACCAAAAATCATTGTTCAAACGAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTATGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACCAGTGCCGGGTGTAACGTGCGGAAGCATGTCGAGAGGTCTTCAACAGACTCAAAAGCTGTTGTAACTACATACGAGGGGAAACACAACCACGATGTTCCTGCAGCCAGAAACAGCAGCCACCACACAGTCAACAATACTGTACCGCAGATCAAACCACATAAAGTTGTAGCTCAGAAACACCCATTACTTAAAGAGAGGGAATTCGGAACCAATGACCAGAGACCTGCTGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA | 1521 | 49.11 | MAKKEDSARAPLQRPTITLPPRPSMEAFFSGGPTGVSPGPMTLVSSFFADGAVDSPSFSQLLAGAMGSPMAMGFLGSGSTPNYYAKDGGASEMEFGLNKHTKPLNLVVARSPLFTVPPGLSPSGLLNSPGFFPPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSSVPAPTESLRRDPSFTLDEPSQQSILPSTSDTKSFIAESTEVSHSDRKYQPPPPSHASDKPADDGYNWRKYGQKLVKGSEFPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPTGCTNSSMKLEYGSQNQAGNFNKSSENVQLGSSDSEEQADTEVTDDRGEDEPNPKRQNIDAGTSAVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEREFGTNDQRPAVLRLKEEQITV | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 24759190 | 24764468 | - | MC04g1727 | Mch4g2348 | 687060 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g2348 | 506 | SUPERFAMILY | WRKY DNA-binding domain | 230 | 291 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | MobiDBLite | consensus disorder prediction | 185 | 209 | - | - | |
Mch4g2348 | 506 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Mch4g2348 | 506 | MobiDBLite | consensus disorder prediction | 300 | 340 | - | - | |
Mch4g2348 | 506 | FunFam | WRKY transcription factor 33 | 379 | 445 | - | - | |
Mch4g2348 | 506 | ProSiteProfiles | WRKY domain profile. | 387 | 452 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 163 | 463 | IPR044810 | GO:0003700(InterPro) | |
Mch4g2348 | 506 | SMART | WRKY_cls | 392 | 451 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | SMART | WRKY_cls | 232 | 290 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | MobiDBLite | consensus disorder prediction | 283 | 371 | - | - | |
Mch4g2348 | 506 | SUPERFAMILY | WRKY DNA-binding domain | 384 | 452 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | ProSiteProfiles | WRKY domain profile. | 227 | 291 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | MobiDBLite | consensus disorder prediction | 160 | 236 | - | - | |
Mch4g2348 | 506 | MobiDBLite | consensus disorder prediction | 163 | 177 | - | - | |
Mch4g2348 | 506 | Gene3D | WRKY domain | 224 | 292 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | Gene3D | WRKY domain | 377 | 453 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | FunFam | WRKY transcription factor | 223 | 292 | - | - | |
Mch4g2348 | 506 | Pfam | WRKY DNA -binding domain | 393 | 450 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch4g2348 | 506 | Pfam | WRKY DNA -binding domain | 233 | 289 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch4g2348 | Mch-Chr4:24759190 | Mch6g1412 | Mch-Chr6:12571243 | 2.25E-65 | dispersed | |
Mch4g0341 | Mch-Chr4:2123975 | Mch4g2348 | Mch-Chr4:24759190 | 5.91E-64 | transposed | |
Mch2g0805 | Mch-Chr2:5538629 | Mch4g2348 | Mch-Chr4:24759190 | 9.64E-63 | wgd | |
Mch4g2348 | Mch-Chr4:24759190 | Mch9g2095 | Mch-Chr9:21929943 | 2.10E-145 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43271 | PF03106 | WRKY | 3.20E-25 | CL0274 | Mch | TF |
Pathway information
