Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2378 ATGAACGCACTTGTCCCAGTTAATCTCGGTCTGACCAAAGGACTGAAATCGAGAACCATTCGCATTCATGGCCTCCCTTACCTGGATCGAACAAACAAGGTCGGCGAAGCAAAGCAGAGCACAATACAGAATTCAAGAATGCACCAACTCCAAGAAGTTTCGCACTGCATTTCTTGGAATTGCTTGGAGAGAGAACAATTCGGAGGGGGAAATGAAGCCTATGATGCTCTTGATCCAACTGGAAACATCACTATCAAGTGGGATGTCATGACCTGGACCTCAGATGGCTACGTGGCCATTGTGAAAATCTACAATTTCCAGCAATATCGTCACATCCAAGCCCCGGGTTGGTCGCTGGGATGGATGTGGGCGAAAAAGGAAGTAATATGGAGCATGGTGGGAGGCCAAGCCATAGAGCAAGGAGATTGTGGAGTACTTAACTCTTGGGTCCAAGATCCTGGAAATGCACTAAGCTCATTTCAGCTAAGTGTTGGTTCATCTGGAGCTAGCAATAGGACTGTCAAAATGCCCAAGAACTTCATTTTGAAAGCACCAGAGCCCGGATATACCTGCGGACCTGCTACGGTTGTTGAACCAAGTACCTTTGTTTCAGCAGATAAGAGAAGGGTCACTCAAGCTTCGACATCGCAACCTGCTCCAAATGTTCCTGCGGCTGCCGAAGCAGCATGGGCAAATTCACATTACTTATCACCCGTTGTTTCAAACTCTGGTGAGAACTTTGAACCTCTGGTTCAATGTGCAAGCCATATGTGTCCAATCCGAATTCACTGGCACAATAAGCTCAACTACAAAGAGTACTGGAGAGTCAAGATCACCATTACAAACTTCAACTACAGAATGAACTATTCAGACTGGAACTTAGTCATTCAGCACCCCAACTTCAGCAATCTGACAAAGATATTTAGTTTCAACTACAAGTCTCTTGTCCCCTATGCAGCAATAAATGATACAGCCATGCTATGGGGAGTCAAGTTCTACAATAATCTGCTAACACAAGCGGGTCCTGTTGGAAACGTACAGACGGAGGTTATTTTTGGAAAGAATAAAGAAACCTTTACATTTGACGAAGGTTGGGGCTTCCCTCGAAGGGTGTACTTCAATGGCGATAATTGCGTCATGCCGCCTCCCGACGCCTAA 1158 45.77 MNALVPVNLGLTKGLKSRTIRIHGLPYLDRTNKVGEAKQSTIQNSRMHQLQEVSHCISWNCLEREQFGGGNEAYDALDPTGNITIKWDVMTWTSDGYVAIVKIYNFQQYRHIQAPGWSLGWMWAKKEVIWSMVGGQAIEQGDCGVLNSWVQDPGNALSSFQLSVGSSGASNRTVKMPKNFILKAPEPGYTCGPATVVEPSTFVSADKRRVTQASTSQPAPNVPAAAEAAWANSHYLSPVVSNSGENFEPLVQCASHMCPIRIHWHNKLNYKEYWRVKITITNFNYRMNYSDWNLVIQHPNFSNLTKIFSFNYKSLVPYAAINDTAMLWGVKFYNNLLTQAGPVGNVQTEVIFGKNKETFTFDEGWGFPRRVYFNGDNCVMPPPDA 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 24926046 24931363 + MC04g_new0624 Mch4g2378 687090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2378 385 PIRSF COBRA 216 385 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch4g2378 385 PIRSF COBRA 143 219 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch4g2378 385 PIRSF COBRA 47 144 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch4g2378 385 Pfam COBRA-like protein 144 215 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch4g2378 385 Pfam COBRA-like protein 97 143 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch4g2378 385 PANTHER PROTEIN COBRA 144 215 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2378 Mch-Chr4:24926046 Mch6g0305 Mch-Chr6:2022687 3.17E-162 dispersed
Mch3g1681 Mch-Chr3:18443883 Mch4g2378 Mch-Chr4:24926046 1.67E-51 wgd
Mch4g2378 Mch-Chr4:24926046 Mch8g2362 Mch-Chr8:26761020 8.70E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2378 - - - 0.0