Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g2385 | ATGGGTGCTGTCTGCTGCTGTTTGAGTGTGGAGGATTATGAAGACTATGTTAATCCAAATAGTTCATTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAACTTTTTAAATGCGTACACATTGATATTCCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGCACAACATCTATGAATTCTACAGCATCAACTGATAACTCTTTATCTGAAATGTATCGCTCACCTCCAAGGCCGTTGCCTTATGATGCTGACCCCAGATACATCCGCTTGCAGCGAGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTTTAAGAAGTGAAGTAGATGCAGATTCAGATTCTTTGGACACGCCAGGCAAGTGGAATGGATCTGCTTGTCTTGATGAATCTAAAGAAAATCTTGGCAAGTCATCTCTTAAGTTTCCTTCAACAAAGTCTACCACTGGAGTTGGGTATGCTTATACATCGTCTGAAGATGAGGATGTTTGTCCGACGTGTCTTGAAGAATACACTTCAGAGAATCCCAAGATAATGACACAATGTTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTATGGTTATTTTTCTCCATCATACTGTATAAACTTGTTCAATTGGTATCTCAAAGCCACACTATTGGTTGA | 729 | 40.33 | MGAVCCCLSVEDYEDYVNPNSSLYRNCTCLSCFIQNFLNAYTLIFRRGEVHSVSSSIQGTTSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDADSDSLDTPGKWNGSACLDESKENLGKSSLKFPSTKSTTGVGYAYTSSEDEDVCPTCLEEYTSENPKIMTQCSHHFHLGCIYEWMERSDNCPVCGKVWLFFSIILYKLVQLVSQSHTIG | 242 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 24980169 | 24985943 | - | MC04g1761 | Mch4g2385 | 687097 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g2385 | 242 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - | |
| Mch4g2385 | 242 | SUPERFAMILY | RING/U-box | 171 | 224 | - | - | |
| Mch4g2385 | 242 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
| Mch4g2385 | 242 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
| Mch4g2385 | 242 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
| Mch4g2385 | 242 | MobiDBLite | consensus disorder prediction | 103 | 132 | - | - | |
| Mch4g2385 | 242 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 221 | - | GO:0004842(PANTHER) | |
| Mch4g2385 | 242 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 154 | 224 | - | - | |
| Mch4g2385 | 242 | MobiDBLite | consensus disorder prediction | 55 | 89 | - | - | |
| Mch4g2385 | 242 | MobiDBLite | consensus disorder prediction | 103 | 128 | - | - | |
| Mch4g2385 | 242 | CDD | RING-H2_AIRP1-like | 173 | 220 | - | - | |
| Mch4g2385 | 242 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 220 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g2385 | Mch-Chr4:24980169 | Mch7g1091 | Mch-Chr7:14913748 | 9.08E-14 | dispersed | |
| Mch4g2385 | Mch-Chr4:24980169 | Mch5g1527 | Mch-Chr5:16258227 | 8.93E-07 | transposed |
Pathway information