Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2400 ATGGGAATGAGGAGAACAGAGGCTGCTGCTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCCTGCTCTCTCCCAAAGGTGTAAACTATGAAGTTCAAGCTCTAATGAGCATAAAAGCTTCCCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGACTCTGTTGACCCATGTAGCTGGACCATGGTTACTTGCTCGGCTGAGAGCCTTGTCATTGGCCTAGGAACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTTCAAGCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATCACAGGCCCAGTTCCTCCAGAGCTTGGGAGGCTCTCAAAGCTTCAAACTCTTGATCTATCAAACAATTTCTTCACTGGGGGAATTCCTTCTTCTTTGGGCCATTTGAGAGGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTATTTCCGATGTCTTTAGCCAACATGACCCAGCTTGCTTTTCTTGATGTGTCTTATAATAATCTCAGTGGCCCTCTGCCCAGATTTCCCAGTAAAACATTCAACATTGTTGGAAACCCTCTGATCTGTGCAAGCGGGTCCGAAGCGGGCTGCCACGGAACGACTCTAATGCCCATGTCCATGAATTTGAACAGTTCACAAACTGGTTTACCTGCTGTGAGATTGAAGAGTCACAAAATGGCTCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAGACGAAGCAATCGACTGACATTCTTCGATGTAAAAGACCGACAACATGAGGAAGTTTCGCTCGGAAATCTGAGAAGGTTCCCATTTAGAGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCGGATGGAACGGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCCAGTAGAGGGGAGATCCAGTTCCAGACAGAAGTTGAGATGATCAGCCTTGCCGTGCACCGTCATCTCCTCAGACTATACGGGTTCTGCAATACGCCGACCGAAAGGCTTCTTGTTTATCCATATATGTCTAATGGAAGCGTTGCTTCACGTCTCAAAGGAAAACCGGTGTTAGACTGGGGAACAAGGAAAAGAATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTCCATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTTGGAGATTTTGGGTTGGCTAAGCTTCTGGATCATCAAGATTCACATGTAACAACTGCCGTGAGAGGCACCGTGGGACATATAGCTCCCGAGTATCTCTCCACTGGACAGTCGTCCGAGAAAACAGACGTTTTCGGATTCGGAATCCTACTCCTTGAACTAATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCAGCAAGAGAAGAAGGTGGAAGTGCTGGTGGACAAGGATTTGAAAGCAAACTATGAGAGAGTTGAGGTAGAGGAAATGGTTCAAGTGGCTCTGCTGTGCACCCAATACATGCCAGGACACAGACCAAAAATGTCAGAAGTTGTGAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCACAGAGAGTGGACACTTCAAAATGCAAACCCCCCCATGATTTCTCTTCCTCGGACAGATACTCTGATCTCACAGATGACTCTTCATTGTTGGTCCAAGCCATGGAGCTCTCTGGCCCAAGGTGA 1884 46.02 MGMRRTEAAASCLVASLLFWASAINGLLSPKGVNYEVQALMSIKASLQDPHGVLENWDGDSVDPCSWTMVTCSAESLVIGLGTPSQNLSGTLSSSIGNLTNLQIVLLQNNNITGPVPPELGRLSKLQTLDLSNNFFTGGIPSSLGHLRGLQYLRLNNNSLSGVFPMSLANMTQLAFLDVSYNNLSGPLPRFPSKTFNIVGNPLICASGSEAGCHGTTLMPMSMNLNSSQTGLPAVRLKSHKMALTFGLSLACLCLIVLVFGLFIWWRRRSNRLTFFDVKDRQHEEVSLGNLRRFPFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIQQEKKVEVLVDKDLKANYERVEVEEMVQVALLCTQYMPGHRPKMSEVVRMLEGEGLAVRWEASQRVDTSKCKPPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25103365 25107462 - MC04g_new0629 Mch4g2400 687112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2400 627 Pfam Protein tyrosine and serine/threonine kinase 309 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2400 627 SMART serkin_6 306 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2400 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2400 627 Gene3D Phosphorylase Kinase; domain 1 275 382 - -
Mch4g2400 627 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Mch4g2400 627 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Mch4g2400 627 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Mch4g2400 627 Gene3D Transferase(Phosphotransferase) domain 1 383 595 - -
Mch4g2400 627 FunFam Somatic embryogenesis receptor kinase 1 275 382 - -
Mch4g2400 627 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515(InterPro)
Mch4g2400 627 ProSiteProfiles Protein kinase domain profile. 306 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2400 627 FunFam Putative LRR receptor-like serine/threonine-protein kinase 33 215 - -
Mch4g2400 627 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 627 - -
Mch4g2400 627 FunFam Somatic embryogenesis receptor-like kinase 1 383 595 - -
Mch4g2400 627 SUPERFAMILY L domain-like 35 306 - -
Mch4g2400 627 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Mch4g2400 627 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1546 Mch-Chr4:18782427 Mch4g2400 Mch-Chr4:25103365 1.88E-265 dispersed
Mch4g2400 Mch-Chr4:25103365 Mch6g0807 Mch-Chr6:5618986 4.20E-84 dispersed
Mch10g0330 Mch-Chr10:2190504 Mch4g2400 Mch-Chr4:25103365 7.02E-151 transposed
Mch10g0671 Mch-Chr10:4619136 Mch4g2400 Mch-Chr4:25103365 1.90E-134 transposed
Mch10g0718 Mch-Chr10:4959368 Mch4g2400 Mch-Chr4:25103365 1.92E-167 transposed
Mch6g0588 Mch-Chr6:3988512 Mch4g2400 Mch-Chr4:25103365 5.05E-225 transposed
Mch8g0035 Mch-Chr8:204411 Mch4g2400 Mch-Chr4:25103365 2.15E-234 transposed
Mch8g1633 Mch-Chr8:13518016 Mch4g2400 Mch-Chr4:25103365 3.27E-17 transposed
Mch4g2400 Mch-Chr4:25103365 Mch9g2027 Mch-Chr9:21513695 4.50E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77371 PF00069 Pkinase 9.60E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2400 - - - 0.0