Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2401 ATGACAGATACAGGTGAAAATCAGCAGCCTGAACAAGTCTGTAGCTTCTTCAAAAAACCCACAAAGAATAAAAACATCAGGAAACGGACGATTGATGAAGATGAGGAGGAGGACTCTAAAACAGAGACTTCGTTGCTGCTAAATCAGAAAAAGGCTCTCAAGACTGAAAGCAAGCTTTATTTTTCTTCTGGACCCTCTAAAAGTTCCTTGTCTAATGAGTCAAATGTGGAATCCGATAAACCAATTTTCCAATTTGAGTCTTCAAAAGAAATTCAAGTTCACCATGATAGCAAAGCTACTGCTACACTTGAAACAGAGACTGAGTTCTCAAGAGATGCACGAGCAATCCGTGAGAGAGTTTTGAAGCAAGCTGATGAGGCTTTGAAGGGTAAAGGAAAGAGTTCTGGGGATGAGAAGAAGTTGTATAAAGGGGTCAATGCCTATGTGGACTACAAGGCTGGCTTCAGAAGGGAACAAACAATTTCAAGTGAAAAAGCTGGTGGAGCACATGGGCCGCTTAGAGCTTCTGCTCATATAAGGGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACTGGTTACTGTGGTTACGGAGATGCATGCAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTAGAGAAAGCAAGGAAGAGAAAATTAGCTATGGGATCTGATGAAGGGGATGAGGATACTGCAGAACAGAGTGATGAAGATGAGGAAGATGCCTTGCCATTTGCATGTTTTATTTGTCGCGAGCCATTTGTAGATCCTGTTATGACCAAGTGCAAACATTATTTCTGTGAGCATTGCGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAGCCTACGCTCGGGATCTTTAACACAGCTCATGAGATACGGAAAAAGATGGCACAGAGTAAATAA 972 42.08 MTDTGENQQPEQVCSFFKKPTKNKNIRKRTIDEDEEEDSKTETSLLLNQKKALKTESKLYFSSGPSKSSLSNESNVESDKPIFQFESSKEIQVHHDSKATATLETETEFSRDARAIRERVLKQADEALKGKGKSSGDEKKLYKGVNAYVDYKAGFRREQTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMGSDEGDEDTAEQSDEDEEDALPFACFICREPFVDPVMTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQSK 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25115090 25119622 - MC04g_new0630 Mch4g2401 687113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2401 323 Pfam Zinc finger, C3HC4 type (RING finger) 263 305 - -
Mch4g2401 323 ProSitePatterns Zinc finger RING-type signature. 279 288 IPR017907 -
Mch4g2401 323 SUPERFAMILY CCCH zinc finger 185 217 IPR036855 GO:0046872(InterPro)
Mch4g2401 323 MobiDBLite consensus disorder prediction 87 106 - -
Mch4g2401 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 321 IPR013083 -
Mch4g2401 323 MobiDBLite consensus disorder prediction 235 255 - -
Mch4g2401 323 MobiDBLite consensus disorder prediction 1 19 - -
Mch4g2401 323 Gene3D - 184 218 - -
Mch4g2401 323 MobiDBLite consensus disorder prediction 1 20 - -
Mch4g2401 323 ProSiteProfiles Zinc finger RING-type profile. 264 302 IPR001841 -
Mch4g2401 323 CDD RING-HC_RNF113A_B 257 310 - -
Mch4g2401 323 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872(InterPro)
Mch4g2401 323 PANTHER ZINC FINGER PROTEIN 183 12 322 IPR039971 GO:0005684(PANTHER)|GO:0034247(PANTHER)
Mch4g2401 323 FunFam Zinc finger CCCH domain-containing protein 1 184 218 - -
Mch4g2401 323 SMART ring_2 264 301 IPR001841 -
Mch4g2401 323 FunFam RING finger protein 113A 262 321 - -
Mch4g2401 323 MobiDBLite consensus disorder prediction 89 106 - -
Mch4g2401 323 SMART c3hfinal6 186 213 IPR000571 GO:0046872(InterPro)
Mch4g2401 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 212 IPR000571 GO:0046872(InterPro)
Mch4g2401 323 SUPERFAMILY RING/U-box 263 307 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43274 PF13920 zf-C3HC4_3 6.80E-09 CL0229 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2401 K13127 - csv:101221334 600.512