Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2458 CTCTCCGGCAGGCTCGGCCGTGGCCTTCTTCAGCTGCAGTTTCTTCGGAAACTATCTCTTTCGAACAATAATCTCACCGGAAATCTAAGCCCCAATAATGCTCGCTTCGAAAATCTCCGGCTGGTCGACTTGAGCGGCAACGGTTTTTCCGGGACGATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTAATTTCTTTAGCTAACAACAAACTTTCCGGGAAAATCCCCGAAAGTTTGGGTTCTTGTTCTAGTCTTGCTGCGGTTAACTTATCCTCTAATCAGTTTTCTGGTTTGTTACCTTCTGCGATTTGGTCCTTGACCGGGCTTCGGTCTTTGGATTTGTCTGACAATGTTTTGGAAGGGGAAATTCCGCAGGAGGTGAAGGGGATGAATAATTTGCGAGGTATTAATTTGGGGAAGAATCGGTTTTCTGGGCAGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCGGTGAGAATTCTTTCTCCGGTGACATTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTAATCTTAATTTGAGAAGGAACTTATTTGAAGGGAAGGTTCCTGAATGGATTGGTGAAATGGAAGGCCTTGAAGTCTTGGACCTTTCAGGAAATAGATTTTCTGGTCAGGTTCCAAGTTCATTTGGGAATCTTCAAAATCTGAAGGTTTTGAATCTTTCTGAAAATGGTTTGACTGGTAGCTTGGCAGAGTCCATAGTTCCTTCTCAAAACCTTTCAACCATGGATCTCAGCCATAGTTCTCTCACCGGCGTTATTCCGGTGTGGATGCTGAAGCTGGGTTCTCAAAATGTGTTGCCTTCTGATGTCAAAAGAAGCTCTCTTTCTACAACAGTGGGAAAAGCACTTGTTAATCTTCAAGTTTTAGATTTATCTCACAATGCATTTTCTGGTGAAATTTCACCCGAGATTGGGATGTTAAGTAGCTTGCAGGTGTTGAACCTGTGTAAGAACTCACTTGTTGGGACTACACCGAAGAGTATTGGACGACTGAAGGCCTTGGTTCTTCTCAACTTGAGTGAGAACCAGTTGAACGGAAGTATTCCCGAAGAAATCGGTGAGGTCGTATCGTTGAAAGAATTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAGAGTCAATAGGGAACTGTTCGTCACTTGTAACTTTGGACGTGTCGGAAAACAGATTAACTGGCTCCATACCAGCAGCATTGTCTAAACTGACTGATCTTCAAATTGTGGATTTATCAACAAACAATCTCAGTGGTGCACTGCCAAAGCAATTGTCCAATCTTCCCAACCTTATTTTGTTTAACATTTCCCACAACAACCTTCAAGGTGAACTGCCTGCAGGTGGCTTTTTCAACACAATTTCCCCTTCCTCTTTGGCTGGAAATCCCTCTCTTTGTGGTTCCATTGTCAAGAAATCTTGCCCTGGTGTCCTTCCAAAACCCATTGTTCTCAACCCCAACTCATCTTCCGACTCTGCTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAGAATCATCCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCAGCCGTTATCCTTGTTGGTGTAGTTGCGATCACCGTCCTTAACTTCCACGTTCGGTCGTCTGAAAATCATCCTGCGGTAGCCATCGCATTCTCTGGAGGGGATGACTTCAGCCACTCCCCAACTACGGATGCAAATTCTGGCAAGCTAGTCATGTTCTCGGGAGAGCCCGACTTCAGTACTGGAGCACATGCCCTTCTTAACAAGGACTGCGAGCTTGGCCGTGGCGGATTTGGAGCGGTTTACCAAACTGTTCTTCGTGACGGGCATCCAGTTGCAATCAAAAAGCTTACTGTTTCAAGTCTTGTCAAATCTCAAGAAGACTTTGAGAGGGAGGTTAAGAAGTTGGGGAAGGTCAGGCACCAAAATCTTGTGGCTCTAGAAGGCTACTACTGGACTCCATCACTACAGCTTCTCATATATGAATTCGTTTCTGGAGGGAGTTTGTATAAACATCTTCATGAAGGATTGGGCGGGAGCGTCCTCTCGTGGAACGAGCGGTTCAACATAATCCTCGGAACAGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAACATAAAATCAAGCAATGTTCTGATTGATGGCTCAGGCGAACCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCGATGCTTGACCGATACGTGTTAAGCAGCAAGATACAGAGTGCACTTGGCTACATGGCGCCCGAGTTTGCCTGCAAGACAGTTAAGATAACCGAGAAATGTGACGTGTATGGGTTTGGAGTTCTGGTTCTTGAGGTGGTAACTGGGAAGAGACCTGTTGAGTACATGGAAGACGACGTCGTGGTACTCTGCGACATGGTTCGTCGGGCGTTGGAAGAAGGTCGGGTGGAGGATTGCATCGACGGGAAGCTCCAGAGGAACTTCCCATCTGAGGAGGCCATACCAGTTGTGAAACTAGGCTTGATATGCACCTCTCAGGTGCCATCAAACCGGCCTGATATGACAGAGGTTGTTAATATATTAGAGCTGATC 2619 46.01 LSGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRLVDLSGNGFSGTIPDDFFRQCGSLRVISLANNKLSGKIPESLGSCSSLAAVNLSSNQFSGLLPSAIWSLTGLRSLDLSDNVLEGEIPQEVKGMNNLRGINLGKNRFSGQIPDGIGSCLLLRSVDLGENSFSGDIPATMQKLSLCSNLNLRRNLFEGKVPEWIGEMEGLEVLDLSGNRFSGQVPSSFGNLQNLKVLNLSENGLTGSLAESIVPSQNLSTMDLSHSSLTGVIPVWMLKLGSQNVLPSDVKRSSLSTTVGKALVNLQVLDLSHNAFSGEISPEIGMLSSLQVLNLCKNSLVGTTPKSIGRLKALVLLNLSENQLNGSIPEEIGEVVSLKELRLEKNLLEGEVPESIGNCSSLVTLDVSENRLTGSIPAALSKLTDLQIVDLSTNNLSGALPKQLSNLPNLILFNISHNNLQGELPAGGFFNTISPSSLAGNPSLCGSIVKKSCPGVLPKPIVLNPNSSSDSASPSLPSTLGHKRIILSISALIAIGAAAVILVGVVAITVLNFHVRSSENHPAVAIAFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKHLHEGLGGSVLSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDGSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEDCIDGKLQRNFPSEEAIPVVKLGLICTSQVPSNRPDMTEVVNILELI 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25472963 25475776 + MC04g1819 Mch4g2458 687170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2458 873 ProSiteProfiles Protein kinase domain profile. 601 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2458 873 Gene3D Phosphorylase Kinase; domain 1 594 677 - -
Mch4g2458 873 SUPERFAMILY L domain-like 53 279 - -
Mch4g2458 873 Gene3D Transferase(Phosphotransferase) domain 1 678 873 - -
Mch4g2458 873 Gene3D Ribonuclease Inhibitor 224 494 IPR032675 -
Mch4g2458 873 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 194 871 IPR051564 GO:0016020(PANTHER)
Mch4g2458 873 Pfam Leucine Rich Repeat 15 31 IPR001611 GO:0005515(InterPro)
Mch4g2458 873 Pfam Leucine Rich Repeat 112 132 IPR001611 GO:0005515(InterPro)
Mch4g2458 873 Pfam Leucine Rich Repeat 135 157 IPR001611 GO:0005515(InterPro)
Mch4g2458 873 Pfam Leucine Rich Repeat 302 323 IPR001611 GO:0005515(InterPro)
Mch4g2458 873 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 678 873 - -
Mch4g2458 873 Gene3D Ribonuclease Inhibitor 1 223 IPR032675 -
Mch4g2458 873 SUPERFAMILY L domain-like 299 483 - -
Mch4g2458 873 SMART LRR_typ_2 229 252 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 109 132 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 205 228 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 444 468 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 61 85 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 133 157 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 36 60 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 300 324 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 348 372 IPR003591 -
Mch4g2458 873 SMART LRR_typ_2 420 443 IPR003591 -
Mch4g2458 873 SUPERFAMILY L domain-like 9 74 - -
Mch4g2458 873 ProSitePatterns Protein kinases ATP-binding region signature. 607 630 IPR017441 GO:0005524(InterPro)
Mch4g2458 873 SUPERFAMILY Protein kinase-like (PK-like) 604 871 IPR011009 -
Mch4g2458 873 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515(InterPro)
Mch4g2458 873 Pfam Leucine rich repeat 326 385 IPR001611 GO:0005515(InterPro)
Mch4g2458 873 Pfam Leucine rich repeat 207 265 IPR001611 GO:0005515(InterPro)
Mch4g2458 873 Pfam Leucine rich repeat 38 98 IPR001611 GO:0005515(InterPro)
Mch4g2458 873 FunFam Leucine-rich repeat receptor-like protein kinase TDR 1 281 - -
Mch4g2458 873 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 282 493 - -
Mch4g2458 873 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 595 677 - -
Mch4g2458 873 Pfam Protein tyrosine and serine/threonine kinase 603 869 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2458 873 CDD STKc_IRAK 607 873 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2458 Mch-Chr4:25472963 Mch8g3147 Mch-Chr8:33763076 1.16E-51 dispersed
Mch10g1493 Mch-Chr10:14889416 Mch4g2458 Mch-Chr4:25472963 2.53E-91 transposed
Mch5g0924 Mch-Chr5:6839872 Mch4g2458 Mch-Chr4:25472963 2.07E-105 transposed
Mch5g2010 Mch-Chr5:19743626 Mch4g2458 Mch-Chr4:25472963 4.78E-197 transposed
Mch4g2458 Mch-Chr4:25472963 Mch9g1420 Mch-Chr9:16572272 7.29E-44 wgd
Mch4g2458 Mch-Chr4:25472963 Mch9g1382 Mch-Chr9:16207679 1.16E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77373 PF00069 Pkinase 1.10E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2458 - - - 0.0