Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2463 ATGGCCGCCGCACCAATCTCCGCCCTCTCGCTTCTATTACTAGTTTCCCTTCCAATAATCTACGCCGACTACGGCCACGCCACATTCTACGGCGGCGGCGACGCCTCCGGCACAATGGGTGGGGCTTGTGGGTACGGGAATTTGTATGGTCAAGGGTATGGGACGAACACTGCGGCGTTGAGTACTGCTCTGTTTAACAATGGCCTGAGCTGCGGGTCCTGCTATGAGATCACCTGCAACAGCGACCCCAAGTGGTGCCTTCCCGGAAAAATCATCGTCACCGCCACCAATTTCTGCCCCCCGAACTTGGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTCGACTTGGCCGAGCCCGCTTTTCTCCAGATCGCTCAGTACCGGGCCGGCATCGTCCCCGTCTCCTTCCGAAGAGTCCCCTGCGTGAAGAAAGGGGGAATAAGGTTCACGATCAACGGCCATTCGTACTTCAACTTGGTGCTGATAACGAACGTGGGCGGCGCCGGCGACGTGCACTCGGTGTCGATAAAGGGGTCGAAAACTGGGTGGCAAGCGATGTCGAGGAATTGGGGACAGAACTGGCAGAGCAACAACTACTTGAACGGACAGAGCTTGTCCTTCCAAGTCACCACCAGCGATGGCCGCACCCTCACCAGTTACGACGCCGTTCCGGCCAACTGGCAGTTCGGTCAGACTTTTGAGGGATCACAGTTC 732 57.79 MAAAPISALSLLLLVSLPIIYADYGHATFYGGGDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNLALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTLTSYDAVPANWQFGQTFEGSQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25504783 25505748 + MC04g1824 Mch4g2463 687175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2463 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Mch4g2463 244 CDD DPBB_EXPA_N 25 147 - -
Mch4g2463 244 FunFam Expansin 20 148 - -
Mch4g2463 244 FunFam Expansin 152 244 - -
Mch4g2463 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Mch4g2463 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576(InterPro)
Mch4g2463 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Mch4g2463 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Mch4g2463 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Mch4g2463 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576(InterPro)
Mch4g2463 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Mch4g2463 244 PANTHER EXPANSIN-A15 16 244 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 SUPERFAMILY Barwin-like endoglucanases 11 170 IPR036908 -
Mch4g2463 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664(InterPro)
Mch4g2463 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Mch4g2463 244 Gene3D - 21 147 IPR036908 -
Mch4g2463 244 Gene3D - 151 244 IPR036749 -
Mch4g2463 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Mch4g2463 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Mch4g2463 244 SMART dpbb_1 57 142 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2463 Mch-Chr4:25504783 Mch9g2116 Mch-Chr9:22063783 5.30E-145 dispersed
Mch4g2463 Mch-Chr4:25504783 Mch9g1387 Mch-Chr9:16250690 6.63E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2463 - - - 0.0