Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2490 ATGAGTCTTTGTCATCAATATTCTGAGGCCGTTTCTTTACCTCTTGATTCTATCAGGAAGAGGAAGTCACGGAGTAGACGAGACCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATTTTCTGAGTCTTGTAACGATGGGGGCAAGCCAATTCGTAAAGCTCCTGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGCAAGGGAGGGCCCTTAAATTCACATTGCAATTACAGAGGTGTGAGGCAGAGGACATGGGGAAAATGGGTTGCGGAGATTCGTGAACCGAACAGGGGAAGCAGGCTGTGGCTCGGTACCTTCCCCACGGCCATTGAAGCCGCTCTAGCCTATGACGAGGCTGCCCGGGCGATGTATGGCCCGTCTGCTCGCCTTAACCTTCCCAACATTACTAACAGAGGGCAGCTCAAAGGGATTCTTTTAGAGGATTATTTGAGGCTGCGAACCTCAGATTCTTCAACTGCTACTTCGACATGTTCTGAATCGACAACGACGACATCGAACCAATCTGAGGTTTGCGTACCTGAGGAGTTTACATTAAGGCCGCAACTTGTCTGCTCAAACATTAAGACTGAAGATGGAGAAGGCGAGTTGAGAACCAGTGATCGGGCCGATCACATTGCAACGCCAATGATTTTAGAGAAGCAAGTGAAGCACGAAGATGCTGATGCTAAAAATGGTGACCAAAGCAGCAATGAACAATCATTCATTTCAGGAATTGGGATTCCTAGTTGGGATGAGTTACAGAACTTTCAAATGGATGAAGTGTTTGATGTGGAGGAGCTGCTAGGCCTGATAAACAGCGATCCCTTGTATGATCCAAGCATCTTGGAGGGCAATGCGAATGGTTCTAATAACATGATGCCTTCCCAAGTTGGCAATGTTGGGTTTGAGAAGCCATCAAACTTGTTATATCAGTTCCAAAATCCAGACGCAAAGCTGCTCGGAAGTCTCCAACACACGGAGCAAACTCCGGCTGATTTCGACGGTGGATTCGATTTCTTGAAGCAGGGGAGGGAGGAGGATATGAATGCTGCAGCAGATGATTATGTAAGATACTTGAATTATGAGACGGGCGATTTGGGTTTC 1119 47.01 MSLCHQYSEAVSLPLDSIRKRKSRSRRDRSTVAETLAKWKAYNEFSESCNDGGKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARAMYGPSARLNLPNITNRGQLKGILLEDYLRLRTSDSSTATSTCSESTTTTSNQSEVCVPEEFTLRPQLVCSNIKTEDGEGELRTSDRADHIATPMILEKQVKHEDADAKNGDQSSNEQSFISGIGIPSWDELQNFQMDEVFDVEELLGLINSDPLYDPSILEGNANGSNNMMPSQVGNVGFEKPSNLLYQFQNPDAKLLGSLQHTEQTPADFDGGFDFLKQGREEDMNAAADDYVRYLNYETGDLGF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25654366 25655484 + MC04g1845 Mch4g2490 687202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2490 373 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2490 373 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2490 373 MobiDBLite consensus disorder prediction 228 248 - -
Mch4g2490 373 FunFam Ethylene-responsive transcription factor 2 80 139 - -
Mch4g2490 373 SUPERFAMILY DNA-binding domain 81 138 IPR016177 GO:0003677(InterPro)
Mch4g2490 373 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2490 373 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 290 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Mch4g2490 373 Pfam AP2 domain 81 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2490 373 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2490 373 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2490 373 SMART rav1_2 81 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0153 Mch-Chr11:996211 Mch4g2490 Mch-Chr4:25654366 2.01E-35 dispersed
Mch2g0613 Mch-Chr2:4217427 Mch4g2490 Mch-Chr4:25654366 1.56E-59 dispersed
Mch4g2490 Mch-Chr4:25654366 Mch8g0812 Mch-Chr8:5716897 2.31E-36 dispersed
Mch4g2490 Mch-Chr4:25654366 Mch4g2496 Mch-Chr4:25708657 2.33E-23 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43280 PF00847 AP2 5.00E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2490 K09286 - csv:101215431 422.55