Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2495 ATGAGAGGTTGCCATGAGACACGCTCTTCATCTTCTTGTGCAGCCTGCAAATTGCTGAAGAGACGATGCACGGCCACTTGCATATTCGCGCCGTATTTCCGGTCCGACGAGCCAAAGAAATTCGCCAAAGTTCACAAAGTGTTCGGGGCCAGCAACGTGAGCAAGATCCTGACGGAGGTGCCGGAGGAGCAGAGGGAGGACACGGTGAACTCGCTGGCTTATGAGGCAGAGGCGCGGCTGAGGGACCCTGTTTACGGCTGCATAGGCGCCATTGCTCTGTTGCAGACCAAAATGGTGGAGCTTCAGCATGATCTGGCCCTCGCCAGAGCTCGTCTCGCTCGTTATGCTAATAATTCTAATACTAATAACAACTCTTGTTCTTCTTCGGCTTCTTGTTCTTCCTCGGGTGTTTTGGACGATTGTGTTGTTAATATGTCTTATGGTGGATTCAGCATCGCTGGTCAGAGTCAGAGTTCATCTGAAATCACCCAATTGGGGTATTTATGTGACTTCACCCATTTTCCCTATCCATTTAAAGCT 540 50.0 MRGCHETRSSSSCAACKLLKRRCTATCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALARARLARYANNSNTNNNSCSSSASCSSSGVLDDCVVNMSYGGFSIAGQSQSSSEITQLGYLCDFTHFPYPFKA 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25700778 25701317 + MC04g1849 Mch4g2495 687207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2495 180 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Mch4g2495 180 Coils Coil 91 118 - -
Mch4g2495 180 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Mch4g2495 180 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2495 Mch-Chr4:25700778 Mch8g2579 Mch-Chr8:28931017 9.31E-45 dispersed
Mch4g2495 Mch-Chr4:25700778 Mch8g1482 Mch-Chr8:11184109 4.20E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43281 PF03195 LOB 1.40E-38 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2495 - - - 0.0