Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2509 CTGTTTGTTATGTCATTTCTTCTACTTAATCCTTCTTTGGCCTCAGCAGCAGTTGGAGGAAATGACACAGATAGGCTTGAATTGCTTTCTTTCAAGTCTTGGATAACTCTTGACCCATTTCGCCTCTTCACCTCCTGGAATGAATCTGTTCATTTCTGCAACTGGGAAGGGGTTAAATGTAGTTTACAACAGAGGGTCACTGAGTTGAATCTTCCCTCTTATCAATTTGTTGGTCAATTGTCACCTTCTATAGGGAACTTGAGCTTCCTTATGGTATTAAACCTCCATAACAATAGCTTTGGGGGGGAAATTCCACAAGATATTGGCAGATTGAGCAGGCTGCAAATATTGGACTTGGGAAACAACAAATTTGTAGGGGAGATTCCCTTCACCATGTCAAACTGCTCAGAGCTCCAATACATTGGCCTTCTTAGCAACAATCTGACTGGCGAATTGCCGAGCAAACTCGGGCGGTTATCCAAGCTTCAAGTACTTGATTTGACTTCCAACCAACTGTTTGGAGAATTGCCTGAAACACTTGGAAATCTGTCATCTCTCAGGGGCTTTTGGGCAAGTCTGAATAATTTCCATGGAAGCATTCCAAGTAGTTTTGGGCAGTTGAAAAATTTGACAGATCTTTCCATTGGGGCAAACAAACTGACAGGTACTATCCCTTCCTCAATCTACAACCTTTCGTCCATAAGAATCTTATCACTTCCAGTAAACCAGCTTGAGGGTCGCCTTCCCACAGATTTAGGCCTCGTATTCCCAAACCTTCAGGTCCTTAGAATCCACACCAATCAATTCAGTGGACCAATTCCTTCTACACTATCCAATGCCTCAGAACTTGTGATGTTTTCCATCGCAAATAACATGTTTACAGGGAACGTTCCGAGCTTGGCAAGCATGAGGCATCTCGAGAATCTTGGACTCTTTGAGAACAATCTTGGATATAGGGATGTTGATGACTTGAATTTTCTGTCTTCTCTAGTTAACTGCACCAATTTGAGTGCTATATCCATCAGTGACAACAATTTTGGTGGACTGCTTCCAGAATATATAAGCAACTTCTCTACGAAGCTCAGGACTATTGGATTCGGAAGGAATTATATTCATGGAACCATTCCAACTGAAATTGGCAATCTCATTCAATTGGAGGCATTGGGTTTGGAGAGTAACCAACTGACTGGTTCTATACCAAGTTCACTGGGGAAACTAAAAAAACTGAATGATTTGTTTTTGAATATGAACAAACTCTCAGGGACAATCCCCCACTCTTTTGGAAATTTGTCTGCGCTAGGGAGATGTAATCTGAGGTTGAACAACTTGACAGGAGCCATACCATCAAGTCTTGGAGAAAACCAGAATTTGCTGATGCTGGCTCTTTCTCAGAACCATCTAACTGGTACAATACCAAAAGAGTTATTGAGTGTTTCATCTTTATCCATTGCTCTGGATCTTTCTGAGAATTTTTTGACTGGCTCCATTCCCTTGGAAGTGGGGAAATTGGTAAACCTTGGCTATTTGCATATTTCAGACAACTTGTTAACTGGGGCTATTCCATCTACTCTCAGTGGTTGCACAAACTTAGAAGATCTTAACTTGGGTGGGAACTTCCTTCAGGGCTCTATACCTCAGTCTTTGAGTGCTTTGAGAGGTCTTGAAAATCTCGACCTCTCTCGCAACCATTTGTCAGGCCAAATTCCGTCTTACTTGCAGGAGTTAAGATTTCTGAGCTATTTGAATTTATCCTTCAACAATTTGGAAGGTGAGGTTCCCACTCAAGGAGTGTTCAAAAATAGAACTGCTTTGTCAATTATTGGAAATAAGCAACTTTGCGGCGGTATACCTGAATTGAATCTACCAAGATGCAGTTTGAATAATCCCACAAAGGAGAAATTATCCATGACATGGAAGGTAATCATCTCAGTTGCTGGTGGACTGGTGGCAAGTCTTCTGGTCTTATGTTCTCTGCTTTTTTTCTGGTCAAGGAAGAAAAGAAATAAGCTGGATTCAGGTCCATTGCCAAGAGTTTCCTATTTTGTTGTATCTTACAATGACCTTCTTAAAGCCACCAATGAGTTCTCTTCCAACAATCTAATTGGAGTCGGCAGTTACGGGTCCGTTTATAAAGGAACTCTCAGTCAGGATGGAGGAGTTGTTGCAGTTAAAGTGTTCAACCTTCAACATAGAAGAGCATCAAAGAGTTTTCTAGCAGAATGTGAAGCCCTTAGAAACATTAAACACCGAAATCTTGTCAAAATTCTTTCTGCATGTTTGGGTTTCGATTTTCAAGGAAACGATTTCATGGCATTGGTTTATGATTTCATGGTTAATGGGAGCTTAGAGAAGTGGCTACATCCAGTAAACCAGGAAGAGGGCCAAGGATATTTAAATATCACTAAAAGGCTTAGTATTGCCATTGATGTAGCTAGTGCTTTGGATTATCTGCACAATGGCAGCCCCATGCCAATAGCTCACTGTGACTTGAAGCCTAGCAATGTTCTTTTGGATGCTGACATGACTGCTCACATTGGAGATTTTGGATTGGCAAAAATTATGGCTCAAACTTCCTTCCGAAAAGTATCAACCGAAACCGGGTCAATCGGTATTAGAGGCTCCATTGGTTATGCTCCTCCAGAGTACGGTATGGGAAGCGAGGTTTCGACATACGGCGATGTGTACAGTTATGGCATCCTTTTGTTGGAGATGTTCACTGGAAAGAGGCCAACTGATGATATGTTCAAAGATGGCTTGACCTTGAACAACTATGTTCTTTCAGCTCTACCCGACCGAGTCGAACAAGTAGTGGATCCAACCATG 2823 41.66 LFVMSFLLLNPSLASAAVGGNDTDRLELLSFKSWITLDPFRLFTSWNESVHFCNWEGVKCSLQQRVTELNLPSYQFVGQLSPSIGNLSFLMVLNLHNNSFGGEIPQDIGRLSRLQILDLGNNKFVGEIPFTMSNCSELQYIGLLSNNLTGELPSKLGRLSKLQVLDLTSNQLFGELPETLGNLSSLRGFWASLNNFHGSIPSSFGQLKNLTDLSIGANKLTGTIPSSIYNLSSIRILSLPVNQLEGRLPTDLGLVFPNLQVLRIHTNQFSGPIPSTLSNASELVMFSIANNMFTGNVPSLASMRHLENLGLFENNLGYRDVDDLNFLSSLVNCTNLSAISISDNNFGGLLPEYISNFSTKLRTIGFGRNYIHGTIPTEIGNLIQLEALGLESNQLTGSIPSSLGKLKKLNDLFLNMNKLSGTIPHSFGNLSALGRCNLRLNNLTGAIPSSLGENQNLLMLALSQNHLTGTIPKELLSVSSLSIALDLSENFLTGSIPLEVGKLVNLGYLHISDNLLTGAIPSTLSGCTNLEDLNLGGNFLQGSIPQSLSALRGLENLDLSRNHLSGQIPSYLQELRFLSYLNLSFNNLEGEVPTQGVFKNRTALSIIGNKQLCGGIPELNLPRCSLNNPTKEKLSMTWKVIISVAGGLVASLLVLCSLLFFWSRKKRNKLDSGPLPRVSYFVVSYNDLLKATNEFSSNNLIGVGSYGSVYKGTLSQDGGVVAVKVFNLQHRRASKSFLAECEALRNIKHRNLVKILSACLGFDFQGNDFMALVYDFMVNGSLEKWLHPVNQEEGQGYLNITKRLSIAIDVASALDYLHNGSPMPIAHCDLKPSNVLLDADMTAHIGDFGLAKIMAQTSFRKVSTETGSIGIRGSIGYAPPEYGMGSEVSTYGDVYSYGILLLEMFTGKRPTDDMFKDGLTLNNYVLSALPDRVEQVVDPTM 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25804281 25807277 - MC04g1863 Mch4g2509 687221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2509 941 SUPERFAMILY L domain-like 23 316 - -
Mch4g2509 941 SUPERFAMILY Protein kinase-like (PK-like) 672 930 IPR011009 -
Mch4g2509 941 FunFam LRR receptor-like serine/threonine-protein kinase EFR 324 630 - -
Mch4g2509 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2509 941 SMART serkin_6 695 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2509 941 Pfam Leucine rich repeat 505 564 IPR001611 GO:0005515(InterPro)
Mch4g2509 941 SMART LRR_typ_2 382 406 IPR003591 -
Mch4g2509 941 SMART LRR_typ_2 87 111 IPR003591 -
Mch4g2509 941 SMART LRR_typ_2 503 527 IPR003591 -
Mch4g2509 941 SMART LRR_typ_2 551 574 IPR003591 -
Mch4g2509 941 SMART LRR_typ_2 159 183 IPR003591 -
Mch4g2509 941 SMART LRR_typ_2 575 600 IPR003591 -
Mch4g2509 941 SMART LRR_typ_2 207 231 IPR003591 -
Mch4g2509 941 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Mch4g2509 941 ProSiteProfiles Protein kinase domain profile. 695 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2509 941 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524(InterPro)
Mch4g2509 941 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Mch4g2509 941 Pfam Protein kinase domain 697 912 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2509 941 FunFam LRR receptor-like serine/threonine-protein kinase EFR 668 776 - -
Mch4g2509 941 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 59 323 - -
Mch4g2509 941 Gene3D Ribonuclease Inhibitor 184 328 IPR032675 -
Mch4g2509 941 SUPERFAMILY L domain-like 333 614 - -
Mch4g2509 941 SMART LRR_sd22_2 159 185 - -
Mch4g2509 941 SMART LRR_sd22_2 503 535 - -
Mch4g2509 941 SMART LRR_sd22_2 207 233 - -
Mch4g2509 941 SMART LRR_sd22_2 406 432 - -
Mch4g2509 941 SMART LRR_sd22_2 551 574 - -
Mch4g2509 941 SMART LRR_sd22_2 111 137 - -
Mch4g2509 941 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 777 941 - -
Mch4g2509 941 Gene3D Transferase(Phosphotransferase) domain 1 777 941 - -
Mch4g2509 941 Pfam Leucine Rich Repeat 209 231 IPR001611 GO:0005515(InterPro)
Mch4g2509 941 Pfam Leucine Rich Repeat 113 135 IPR001611 GO:0005515(InterPro)
Mch4g2509 941 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Mch4g2509 941 Pfam Leucine Rich Repeat 258 279 IPR001611 GO:0005515(InterPro)
Mch4g2509 941 Pfam Leucine Rich Repeat 161 183 IPR001611 GO:0005515(InterPro)
Mch4g2509 941 Pfam Leucine Rich Repeat 90 111 IPR001611 GO:0005515(InterPro)
Mch4g2509 941 Pfam Leucine Rich Repeat 385 406 IPR001611 GO:0005515(InterPro)
Mch4g2509 941 Gene3D Phosphorylase Kinase; domain 1 678 776 - -
Mch4g2509 941 Gene3D Ribonuclease Inhibitor 329 633 IPR032675 -
Mch4g2509 941 PANTHER OS04G0122200 PROTEIN 35 940 IPR051809 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0571 Mch-Chr3:9933806 Mch4g2509 Mch-Chr4:25804281 2.06E-98 dispersed
Mch4g2509 Mch-Chr4:25804281 Mch9g1482 Mch-Chr9:17229565 3.41E-132 dispersed
Mch3g1065 Mch-Chr3:14193198 Mch4g2509 Mch-Chr4:25804281 7.18E-74 transposed
Mch8g1057 Mch-Chr8:7425633 Mch4g2509 Mch-Chr4:25804281 8.15E-66 transposed
Mch3g1106 Mch-Chr3:14458785 Mch4g2509 Mch-Chr4:25804281 1.13E-36 wgd
Mch4g2509 Mch-Chr4:25804281 Mch5g1924 Mch-Chr5:19170040 3.63E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77375 PF00069 Pkinase 8.00E-39 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2509 - - - 0.0