Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2518 ATGGCGAAGATTGAGAACACGGTGTTGCAATTTTCACAGTCTTCTTCTACCACCTTATCTGCGAAGGTTCACCCTCTTGTTATCTTCAACATTTGCGATTGCTTTGTGAGGCGGCCGGACCAGGCTGAACGAGTGATCGGTACTCTCCTTGGCTCGGTTTTACCTGATGGAACGGTCGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGTTGGATATTGATTATCATCACAATATGTTGGTTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATTGTTGGATGGTACTCAACTGGTATGGGAGTTACGGGTGGCAGTGCATTGATACACGAGTTTTATTCTAGAGAAGTTGCTAACCCTATTCACCTGACTGTTGATACTGGATTTAGAACTGGAGAAGGGACAATAAAAGCCTATGTATCTGTCAACTTGTCTCTGGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAATTCCATTGGATCTTCGAATGATTGAAGCTGAGAGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAACTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGATTACTCGCATTAATTGACGATATTTACAAATATGTTGATAATGTTGTGGAAGGGCATGTCGAGCCAGACAACACAATTGGGAGATTTCTAGCCGACAGTGTAGCATCTCTTCCAAAACTGTCACCATCTGCTTTTGATAAGCTGATGAATGACAACGTGCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACAAGGACACAGCTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAAATCCTGTAA 861 42.16 MAKIENTVLQFSQSSSTTLSAKVHPLVIFNICDCFVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLVSHQKVNPKEVIVGWYSTGMGVTGGSALIHEFYSREVANPIHLTVDTGFRTGEGTIKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGHVEPDNTIGRFLADSVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 25862404 25865782 + MC04g1871 Mch4g2518 687230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2518 286 Pfam Maintenance of mitochondrial structure and function 173 280 IPR024969 -
Mch4g2518 286 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 19 123 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Mch4g2518 286 SMART pad1_6 20 151 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Mch4g2518 286 Gene3D Cytidine Deaminase, domain 2 7 187 - -
Mch4g2518 286 CDD MPN_eIF3f 22 279 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch4g2518 286 ProSiteProfiles MPN domain profile. 21 152 IPR037518 -
Mch4g2518 286 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 19 282 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch4g2518 286 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 282 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
Mch4g2518 286 FunFam Eukaryotic translation initiation factor 3 subunit F 9 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0629 Mch-Chr1:10444556 Mch4g2518 Mch-Chr4:25862404 1.76E-29 wgd
Mch4g2518 Mch-Chr4:25862404 Mch5g1916 Mch-Chr5:19116344 1.51E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2518 K03249 - csv:101205957 519.235