Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g2531 | ATGACGACAATAGACAACTCCCACGTCATCGCTGTGGAAGAAGAGGAAGAGGGGCCTCGCCGGGCTTCCACCACCGGCGCTGACGTCTCACCGCGGCGGCGCGGGGCTGAGATTGAGGCCGAGAAAAGAAGGGGATCCTCTGTTTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCCAAAATCGAGAGGGATTGCCGGATTTGCCATCTGAGTTTGGATTCTTCCAATCACGAATCTGGAATCCCTATCGAGCTGGGTTGTTCCTGTAAGGACGATTTGGCTGCTGCCCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTCAAGAAGCCGATTCAACAGAGCAGCGGAATGACTCAACTGATGCAACGACAGCGACTGCTGCAGCTGCTGTTGTGGTACCACCGCACTCTACAGAATCTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAACTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAA | 609 | 51.56 | MTTIDNSHVIAVEEEEEGPRRASTTGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 25949048 | 25952174 | + | MC04g1883 | Mch4g2531 | 687243 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g2531 | 202 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 67 | 133 | IPR011016 | GO:0008270(InterPro) | |
| Mch4g2531 | 202 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 139 | IPR013083 | - | |
| Mch4g2531 | 202 | PANTHER | ZINC FINGER, RING-CH-TYPE | 33 | 201 | - | - | |
| Mch4g2531 | 202 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Mch4g2531 | 202 | SUPERFAMILY | RING/U-box | 72 | 129 | - | - | |
| Mch4g2531 | 202 | SMART | ringv_2 | 74 | 127 | IPR011016 | GO:0008270(InterPro) | |
| Mch4g2531 | 202 | Pfam | RING-variant domain | 75 | 126 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g0151 | Mch-Chr3:1879493 | Mch4g2531 | Mch-Chr4:25949048 | 7.09E-47 | dispersed | |
| Mch1g0085 | Mch-Chr1:2192504 | Mch4g2531 | Mch-Chr4:25949048 | 2.58E-10 | transposed | |
| Mch1g0649 | Mch-Chr1:10607114 | Mch4g2531 | Mch-Chr4:25949048 | 3.48E-56 | wgd | |
| Mch4g2531 | Mch-Chr4:25949048 | Mch5g1893 | Mch-Chr5:18987619 | 2.05E-73 | wgd |
Pathway information