Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2550 ATGGCAACAATTTCCCGGCGGCTACTCCTCTTGGCGGCGGCGCTACTCGCAACCGCGGAAATCGAAACCTCCACCACCCGATGCCCGAATTGCGGCGGCACCCCCGTCCCCTATCCTCTGAGCACTAGCTCCACCTGTGGGGGCCAATCGTACAAGATCCGGTGCGACGCGGGCTCTCTGAGATTCGACACGCTCAACAACTCCTACCCGATCATCTCCATCAACCCCAAAATCCAACGGCTGGTGATCCGCCCCTCGGGCTTCCTCCCCAACACCTGCGTCACAGCGGATATCGCCCACGACGGAATCAAACTCAACAGTTCCTTACCCTTCAACGTCACCAGCGGGAACACGATCCTCTACTTCAACTGCACCGAATCACTCCTTCGCTCGCCGTTGAACTGCTCCTCCACGAGCCTGTGCCACAGCTATATCAACGGCACGAGCGCCGTGAAGCCGTGCGAGGCGGCGCCGTTGTGCTGCACGTTTCGGGCGGGGGGATCGTCGAATTCATACATGATACGGGTTCGAGAGTCTGGGTGCAGCGCGTACACGAGCTTCGTGAACTTGAATCCGAGTGCAGGGGGGTGGCCGGAGCCGGGGTTGGAGTTGCAGTGGGTGGCGCCGCGTGAGCCAGTGTGTGAGAGGGCCGGTGATTGTGACGGGAACGCGGCCTGCGGCGTTGATCCCAATGGGACGGGGCTCAGACGGTGTTTCTGTAAGCCTGGGTTCGTGTGGGACGCGGTTGCTGGCGTCTGCTCCCAAAATACGTGTCAAGATCCTGACGGTTGTAGCAAGTCCCGAACTGCACTAATTGCCAGCTTAGTATCCGGCGTCGGAGCCGCGCTCATCGTGTCAACGATTGCCTTCCTACTGTACAGTCGCCATAGACGAGCGAAAGAAGCTCAAGAGCGTTTAACCAGGGAGCGGGAAGCAATTCTGAACTCCAACGGAGGAGTCGGAAGGGCCGCAAAGATCTTCACGGGCAAAGAGATCAAGAGAGCCACCCACAACTTCTCCGCCGACCGCCTCCTCGGTGCCGGCGGATACGGCGAGGTCTACAAAGGCCTTCTCGGAGACGGCACTGCCGTCGCCGTCAAGTGCGCCAAGCTTGGGAACGCCAAAGGCACCGATCAAGTCCTCAATGAAGTCAGAATCCTCTGCCAAGTCAACCACCGCAGCCTCGTCCGCCTCCTCGGCTGCTGCGTCGAGTTGGAGCAGCCAATTCTGGTGTACGAGTACATCCCCAACGGCACTCTGCTCGACCATTTACAAGGTAATAATCATACGAGATCATTATCGTGGGAAGAACGGCTGCGGATCGCGGCGGGGACGGCGGAGGGTCTATCGTACCTCCACTTCTCGGCGGCGACGGCAATCTACCACCGAGACGTGAAATCGAGCAACATCCTTGTGGACGAGAAGCTGAATCCGAAGGTATCGGATTTTGGACTGTCGAGATTGGCGGAGACGGATCTGAGCCACATCTCAACCTGCGCTCAGGGGACTCTGGGATACCTAGATCCGGAATACTACCGGAGCTACCAGCTGACGGACAAGAGCGACGTGTACAGCTTCGGAGTGGTGCTGCTGGAGCTGTTGACGTCGGAGAAGGCGATCGATTTCGGGAGGGAGGCGGAGGACGTGAATTTGGCGGTTTATGTGCAGAGGATGGTGGAGGAGCAGAAATTGGTGGACGCCATTGATCCGGCGCTGAGGAAGGGCGCGACGGAGTTGGAGGTGGAGACGATGAAGGCTTTGGGATTTCTGGCGATGGGATGCTTGGAAGAGAAGAGGCAGAATCGGCCTTCGATGAAACAAGTGGTGGAGGAGATTGAGTACATCATTAGTATCGCCACCGCCAAGGTTCACCCCAAATATTTTAATCAGTAA 1893 58.06 MATISRRLLLLAAALLATAEIETSTTRCPNCGGTPVPYPLSTSSTCGGQSYKIRCDAGSLRFDTLNNSYPIISINPKIQRLVIRPSGFLPNTCVTADIAHDGIKLNSSLPFNVTSGNTILYFNCTESLLRSPLNCSSTSLCHSYINGTSAVKPCEAAPLCCTFRAGGSSNSYMIRVRESGCSAYTSFVNLNPSAGGWPEPGLELQWVAPREPVCERAGDCDGNAACGVDPNGTGLRRCFCKPGFVWDAVAGVCSQNTCQDPDGCSKSRTALIASLVSGVGAALIVSTIAFLLYSRHRRAKEAQERLTREREAILNSNGGVGRAAKIFTGKEIKRATHNFSADRLLGAGGYGEVYKGLLGDGTAVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDHLQGNNHTRSLSWEERLRIAAGTAEGLSYLHFSAATAIYHRDVKSSNILVDEKLNPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRSYQLTDKSDVYSFGVVLLELLTSEKAIDFGREAEDVNLAVYVQRMVEEQKLVDAIDPALRKGATELEVETMKALGFLAMGCLEEKRQNRPSMKQVVEEIEYIISIATAKVHPKYFNQ 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26047817 26050677 - MC04g1901 Mch4g2550 687262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2550 630 FunFam Wall-associated receptor kinase-like 20 415 625 - -
Mch4g2550 630 FunFam Wall-associated receptor kinase-like 20 300 414 - -
Mch4g2550 630 SUPERFAMILY Protein kinase-like (PK-like) 324 612 IPR011009 -
Mch4g2550 630 Gene3D Phosphorylase Kinase; domain 1 315 414 - -
Mch4g2550 630 ProSiteProfiles Protein kinase domain profile. 339 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2550 630 Pfam Protein tyrosine and serine/threonine kinase 342 612 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2550 630 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524(InterPro)
Mch4g2550 630 CDD STKc_IRAK 345 613 - -
Mch4g2550 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2550 630 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 25 615 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Mch4g2550 630 SMART serkin_6 339 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2550 630 Gene3D Transferase(Phosphotransferase) domain 1 415 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2550 Mch-Chr4:26047817 Mch5g1679 Mch-Chr5:17570331 1.32E-189 dispersed
Mch4g2550 Mch-Chr4:26047817 Mch1g0694 Mch-Chr1:10918023 4.19E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77376 PF07714 PK_Tyr_Ser-Thr 5.40E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2550 - - - 0.0