Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2556 ATGGCGAATAGATCTTGGTGGGCTGGAATTGGGAATCTTAGCATGACTGGAATCGACGATCCTTCCAATTTATCTTCATCTCCATCCTTCGATCATCCCAAAATTACGCAACACCAAGAGGAGGAGGACCATCAAATTGGGCCATCCAGAAACCCTAAGCCACGCGGCCAAGACTACTCCGAAGAAGACGATACTAAAAAACAGCGCCGCCCACGAGGCCGCCCCCCGGGCTCCAAAAACAAGCCCAAGCCCCCCATTGTCATCACCAAACACAGCCCCAACGCCCTCCACAGCCACGTCCTCGAGATCACCGCCGGCACCGACATCGCCCACTCCATCTCCGCCTTCGCCCACCGCCGCCGCTGCGGCGTCTCCATCCTCAGCGGTAGTGGCGCCGTCGCCGACGTCACCCTCCGCCAGCCGGCCGCGCCCGGCGGGGTTGTAACCTTCCGCGACCGGTTCGAGATATTGTCCCTCTCCGGCGCGTTCCTGCCGGCGCCGACGCCGACGCCGCATGGGGCGAACGGGCTGACGGTGTACCTGGCCGGCGGGCAAGGGCGGGTCGTGGGAGGGCTGGTGGCGGGCCCGCTGATGGCAGCCGGTCCGGTGATTGTAATTGCGGCGTCGTTTACGAATGCAATTTACGAGAAATTGCCAATCGAGGAATTAGATGATGAAGAGATGAATGCGAATAATGATGAGGAAATGGGATTAGAGAAACAATCGGGAGATGGAGATAACAGTAATGGGAATAATTCAGCATCTCAGGCACGGGCAGTGGGAGAATCGGTATATAATTTGATTCCAAATAATTCTCAAATTTCCCATGATGTTTTTTGGGGTCCTCTTCCTCCTCCTCCATCTTAT 867 56.63 MANRSWWAGIGNLSMTGIDDPSNLSSSPSFDHPKITQHQEEEDHQIGPSRNPKPRGQDYSEEDDTKKQRRPRGRPPGSKNKPKPPIVITKHSPNALHSHVLEITAGTDIAHSISAFAHRRRCGVSILSGSGAVADVTLRQPAAPGGVVTFRDRFEILSLSGAFLPAPTPTPHGANGLTVYLAGGQGRVVGGLVAGPLMAAGPVIVIAASFTNAIYEKLPIEELDDEEMNANNDEEMGLEKQSGDGDNSNGNNSASQARAVGESVYNLIPNNSQISHDVFWGPLPPPPSY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26074598 26075464 + MC04g1907 Mch4g2556 687268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2556 289 Gene3D - 97 239 - -
Mch4g2556 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 282 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch4g2556 289 MobiDBLite consensus disorder prediction 16 33 - -
Mch4g2556 289 MobiDBLite consensus disorder prediction 1 93 - -
Mch4g2556 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 226 - -
Mch4g2556 289 CDD DUF296 99 210 IPR005175 -
Mch4g2556 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 211 IPR005175 -
Mch4g2556 289 MobiDBLite consensus disorder prediction 242 258 - -
Mch4g2556 289 ProSiteProfiles PPC domain profile profile. 93 231 IPR005175 -
Mch4g2556 289 FunFam AT-hook motif nuclear-localized protein 96 227 - -
Mch4g2556 289 PIRSF ESCAROLA 14 285 IPR014476 GO:0003680(InterPro)
Mch4g2556 289 MobiDBLite consensus disorder prediction 34 71 - -
Mch4g2556 289 MobiDBLite consensus disorder prediction 236 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1610 Mch-Chr11:14553066 Mch4g2556 Mch-Chr4:26074598 2.64E-28 dispersed
Mch11g1614 Mch-Chr11:14677106 Mch4g2556 Mch-Chr4:26074598 4.79E-33 dispersed
Mch4g2556 Mch-Chr4:26074598 Mch8g2974 Mch-Chr8:32422099 1.10E-65 dispersed
Mch4g2556 Mch-Chr4:26074598 Mch9g1539 Mch-Chr9:17699058 8.31E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2556 - - - 0.0