Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2561 ATGAGTTTTGTTTTCCGTGGAACAAGAGTGCCAGATATAGAAAATGGTCTATCTGGATTTATACCCGAGCGACGTGCAATGCGGGTCCATGCAGCACGGCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTTCTGTTGTTATTCATGATATTAAACTCTCACCAGATGTCGCCAAACTTTCTACTCTGGCTTGTGCTTGGTGTCTTCTTGATGGCTACAACATTAAGGATGTACGCAACGTGTCAACAACTTCAGGCTCAAGCCCAAGCTCGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGCTACATATGCCACCATCAATAGCACTTGCAACCAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATCGTGAATTTGATGATTTAGACTATGAGACTTTGAGAGCATTGGATTCTGATAATGTTCCAACAACACCTTCTATGAGTGAGGAACAAATAAACGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACTCCGCTATGAATCAACAAGCTTCATCTTCTGAATCTAATGAGAAGAGGCAAGATTCTGTTAGTGCAGTTGGCGGTACTAAGACCTTAGAGGATGAACTGACTTGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAGCTCATACGTAGTTTGCCATGCTTGCATCAGTTCCATACAAACTGCATCGATCCATGGCTGCGACAGCAGGGAACATGCCCTGTTTGTAAATTCAGAGCGGTGACCGGGTGGTCAGAACACGGGCATGGGGAAACCGATGCTTATATGGTTTAA 828 45.05 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGPQSDSAMNQQASSSESNEKRQDSVSAVGGTKTLEDELTCSVCLEQVNVGELIRSLPCLHQFHTNCIDPWLRQQGTCPVCKFRAVTGWSEHGHGETDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26098202 26104892 + MC04g1911 Mch4g2561 687273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2561 275 CDD RING-H2_PA-TM-RING 213 255 - -
Mch4g2561 275 SMART ring_2 214 254 IPR001841 -
Mch4g2561 275 MobiDBLite consensus disorder prediction 176 202 - -
Mch4g2561 275 PANTHER TARGET OF ERK KINASE MPK-1 2 258 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Mch4g2561 275 SUPERFAMILY RING/U-box 208 261 - -
Mch4g2561 275 MobiDBLite consensus disorder prediction 174 202 - -
Mch4g2561 275 Pfam Ring finger domain 213 255 IPR001841 -
Mch4g2561 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Mch4g2561 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 259 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2561 Mch-Chr4:26098202 Mch5g1527 Mch-Chr5:16258227 3.17E-09 dispersed
Mch4g2561 Mch-Chr4:26098202 Mch9g2122 Mch-Chr9:22095584 3.73E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2561 K16283 - csv:101216306 489.574