Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2621 TTAGACCTCTCTCAAAATGTCTTCAATGGTTCCATTCCAGATGGGTTTGGTTCCCACTTGACATCTCTTCAGAATCTCAATCTTTCCTTCAATGTGATCCACGGTTCGATCCCTCAGAACTTTGGCAACCTGTCCAACTTGAAAGGTACTCTCGACTTGTCTCACAATGTCTTTACCGGTCCAATCCCGCCGAGCCTAGGCAGCCTCCCTGCGACCCTTTATATTGATCTCAGTTACAATAATCTCACTGGCTCAATACCACCACAAGAAGCTTTCCAGAACCTTGGACCAACGGCTTATGTAGGCAATACCTTTCTATGTGGACTTCCCCTCAACGTTTCATGTCCATCCGTAGTGCCAATGTCGAACCCCGACTCCAAGTCTTGGTTCCATTGCCCATCACACGGGAAAGGTGGAAAATCTTGCTCCATATTCGCACTTTCTGCAAGTATCATAGTTGGTTTCTGCCTGGTTATCCTGCTAGTTTTGTGGTGCAAGAGAACTAATCCTCCTAAAGGGGGTGTAAATCCAGATGGCTGTAACTTCAGAGAGGCATTGATGTTTAAAACAGAGTTTTCTTGCTTTGCAAAATATGAAGTCGAGCCCCTACCAGCAAACATGGAGAAGTACAACTTTGTGCTATTGGACCGGCATGTCGACTTTGATATCGAGCAACTCCTGAAAGCCTCAGCTTATCTTCTAGGCAAGAATGGGAATGGGATTGTGTATAAAGTGGTTCTTGAGAAAGGGCTAAGTCTGGCTGTAAGAAGATTGGAAGATGGAGCTTATGAAAGGTTTAAAGAGTTCCAAACTGAAGTTGAAGCAATTGGGAAAGTCAGACATCCAAATATTGTTGGCCTTTTAGCTTACTGCTGGTCTGTTCAAGAGAAGCTGCTCATACATGAGTACATACCACAGGGAGACCTGGCCACTGCAATTCATGGAAAAGCAGAAATTTCGTACTTCAGACCACTTTCTTGGCCCGATCGTGTGAAAATCATGAGAGGAATAGCAAAAGGATTGGCACACCTTCACGAATTCAGTCCAAGAAAATACGTCCATGGCGATTTGAAGCCCACCAACATTCTGCTCGGAAACAACATGGAACCTTACATCTCGGATTTCGGACTCGGACGACTTGCTAATGCCGCCGGAGATTCCACCGGCTCCCCGTCGGAGCAAACCGCGGCCGCCACGCCGCGGCAGCAAAACTCTCCGTTCCGATCAAACTCCATGTGCTCCTCTGTGTCGATAGGGTCCTATTATCAAGCTCCCGAAGCTTTGAAGACCGCAAAACCGTCGCAGAAGTGGGATGTTTACTCATTCGGTGTGATTTTACTCGAAATTATCTCTGGAAAGTTGCCGGTGATTCAAGCTGGGTCGTCTGAAATGGAGCTGATTCAATGGATTCAACTTGGTATTGACGAAGGAAAACCCAGATTGGATATCTTAGATCCGTCATTGGGTGAGCATGTGGACAAGGAAGAAGCCGCAGCCGCCATTACAATAGCTGTTACTTGCACCCGCAAGAGCCCTGAGAAGAGACCCTGTATGAGAACTGTCTCTGAATGTCTGGAAAAATTG 1584 46.53 LDLSQNVFNGSIPDGFGSHLTSLQNLNLSFNVIHGSIPQNFGNLSNLKGTLDLSHNVFTGPIPPSLGSLPATLYIDLSYNNLTGSIPPQEAFQNLGPTAYVGNTFLCGLPLNVSCPSVVPMSNPDSKSWFHCPSHGKGGKSCSIFALSASIIVGFCLVILLVLWCKRTNPPKGGVNPDGCNFREALMFKTEFSCFAKYEVEPLPANMEKYNFVLLDRHVDFDIEQLLKASAYLLGKNGNGIVYKVVLEKGLSLAVRRLEDGAYERFKEFQTEVEAIGKVRHPNIVGLLAYCWSVQEKLLIHEYIPQGDLATAIHGKAEISYFRPLSWPDRVKIMRGIAKGLAHLHEFSPRKYVHGDLKPTNILLGNNMEPYISDFGLGRLANAAGDSTGSPSEQTAAATPRQQNSPFRSNSMCSSVSIGSYYQAPEALKTAKPSQKWDVYSFGVILLEIISGKLPVIQAGSSEMELIQWIQLGIDEGKPRLDILDPSLGEHVDKEEAAAAITIAVTCTRKSPEKRPCMRTVSECLEKL 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26410952 26412839 - MC04g1967 Mch4g2621 687333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2621 528 SMART serkin_6 228 525 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2621 528 MobiDBLite consensus disorder prediction 385 411 - -
Mch4g2621 528 ProSiteProfiles Protein kinase domain profile. 228 528 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2621 528 Pfam Leucine Rich Repeat 74 88 IPR001611 GO:0005515(InterPro)
Mch4g2621 528 Pfam Leucine Rich Repeat 50 69 IPR001611 GO:0005515(InterPro)
Mch4g2621 528 Pfam Leucine Rich Repeat 22 44 IPR001611 GO:0005515(InterPro)
Mch4g2621 528 Pfam Protein kinase domain 234 521 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g2621 528 Gene3D Ribonuclease Inhibitor 1 119 IPR032675 -
Mch4g2621 528 MobiDBLite consensus disorder prediction 383 411 - -
Mch4g2621 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g2621 528 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 526 IPR046959 -
Mch4g2621 528 FunFam Leucine-rich repeat receptor-like protein kinase 22 117 - -
Mch4g2621 528 SUPERFAMILY Protein kinase-like (PK-like) 233 525 IPR011009 -
Mch4g2621 528 Gene3D Transferase(Phosphotransferase) domain 1 304 528 - -
Mch4g2621 528 SUPERFAMILY L domain-like 1 111 - -
Mch4g2621 528 Gene3D Phosphorylase Kinase; domain 1 204 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1364 Mch-Chr4:17006297 Mch4g2621 Mch-Chr4:26410952 1.10E-113 dispersed
Mch4g2621 Mch-Chr4:26410952 Mch9g2356 Mch-Chr9:23523897 7.64E-94 dispersed
Mch4g2621 Mch-Chr4:26410952 Mch9g1932 Mch-Chr9:20819970 2.29E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77379 PF00069 Pkinase 8.90E-34 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2621 - - - 0.0