Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2646 ATGGCGACGTCGCCGGAAAGAGAGGAGTATGTCCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGTTCAGCTCATGGGGAAATGCCTTTGGTAGTCGACTAGAGTCGAGCGTATCGCCTATTATAAAAGTGGACGATTGTGTAGACAATAAACCGGAGTTCATTCCTTCTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAACCAATCAACGATAAGGTACAAAGACGTTTAGCACAAAATCGCGAAGCCGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACAAGCCGCTTGAAGCTAGCACAGTTGGAGCAGGAGCTAGAGAGAACCAGGCAAAAGGGTGTATACTCAAGCTGCGTAATCGATACTGGCCACTTGGGATTTGGTGGGTCGGTAAACCCAGGGATTGCTGCATTTGAGACGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCATCGAACTCAGAAAGGCATTACAACTTCATATAACCGATATAGAACTCCAAATTTTGGTGGAGAGCAGCTTAAAACATTACTACAATCTATTTTGCATGAAACAAAATGCTGCAAGGGCTGATGTATTCTATTTAATGTCCGGGGTATGGAGAACATCGGCAGAGCGTTTTTTCCTCTGGATAGGAGGATTTCGCCCATCGGAGCTGCTAAATGTTCTCAAGGCATACCTTGAGCCGTTAAACGAACAACAACGAGCCGATATACACAATTTGCAGCAATCGTCTCGGCAAGCTGAAGATGCCCTTTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCACAGCATTGCCAATGATCCTCTAGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAAACTAGAAGTACTGAAGAGCTTTATAAGCCAGCCGAGTGATTGTTACAATTTTCTCGAACAGGCAGACCATCTCAGGCAAGAAACTTTGAAGAGAATGTCTCACATCCTAACCACGAAACAAGCAGCGCAAGGCTTGCTTGCTCTGGGCGAGTACTTCCACCGTCTCCGCGTTCTCAGTTCCCTCTGGTCCGCTCGACCTCGCGAACCTTCCTAG 1167 45.67 MATSPEREEYVHFTLMIGQQSMSSSSTQLCASRMGIYEPFHQFSSWGNAFGSRLESSVSPIIKVDDCVDNKPEFIPSESMDHLESSQEMNKPINDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTRQKGVYSSCVIDTGHLGFGGSVNPGIAAFETEYNHWVEEQQRQIIELRKALQLHITDIELQILVESSLKHYYNLFCMKQNAARADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKAYLEPLNEQQRADIHNLQQSSRQAEDALSQGMEKLHQNLSHSIANDPLGSYISQMGDGMEKLEVLKSFISQPSDCYNFLEQADHLRQETLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWSARPREPS 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 26572233 26577755 + MC04g1979 Mch4g2646 687358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2646 388 SMART brlzneu 92 147 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2646 388 Pfam bZIP transcription factor 95 134 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2646 388 Gene3D - 95 144 - -
Mch4g2646 388 FunFam BZIP family transcription factor 95 144 - -
Mch4g2646 388 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 99 114 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2646 388 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 94 138 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2646 388 Coils Coil 264 284 - -
Mch4g2646 388 SUPERFAMILY Leucine zipper domain 96 137 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g2646 388 Coils Coil 115 142 - -
Mch4g2646 388 Pfam Seed dormancy control 183 257 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch4g2646 388 ProSiteProfiles DOG1 domain profile. 165 383 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch4g2646 388 PANTHER TRANSCRIPTION FACTOR TGA9 22 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0715 Mch-Chr10:4939660 Mch4g2646 Mch-Chr4:26572233 1.71E-121 dispersed
Mch3g0661 Mch-Chr3:11100891 Mch4g2646 Mch-Chr4:26572233 3.22E-77 dispersed
Mch4g2646 Mch-Chr4:26572233 Mch8g0171 Mch-Chr8:1092042 5.62E-96 dispersed
Mch4g2646 Mch-Chr4:26572233 Mch2g0253 Mch-Chr2:1875375 1.83E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43290 PF14144 DOG1 5.40E-27 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2646 K14431 - csv:101217648 646.351