Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g2646 | ATGGCGACGTCGCCGGAAAGAGAGGAGTATGTCCATTTTACTCTTATGATTGGTCAACAGAGTATGAGCTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGTTCAGCTCATGGGGAAATGCCTTTGGTAGTCGACTAGAGTCGAGCGTATCGCCTATTATAAAAGTGGACGATTGTGTAGACAATAAACCGGAGTTCATTCCTTCTGAATCAATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAACCAATCAACGATAAGGTACAAAGACGTTTAGCACAAAATCGCGAAGCCGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACAAGCCGCTTGAAGCTAGCACAGTTGGAGCAGGAGCTAGAGAGAACCAGGCAAAAGGGTGTATACTCAAGCTGCGTAATCGATACTGGCCACTTGGGATTTGGTGGGTCGGTAAACCCAGGGATTGCTGCATTTGAGACGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCATCGAACTCAGAAAGGCATTACAACTTCATATAACCGATATAGAACTCCAAATTTTGGTGGAGAGCAGCTTAAAACATTACTACAATCTATTTTGCATGAAACAAAATGCTGCAAGGGCTGATGTATTCTATTTAATGTCCGGGGTATGGAGAACATCGGCAGAGCGTTTTTTCCTCTGGATAGGAGGATTTCGCCCATCGGAGCTGCTAAATGTTCTCAAGGCATACCTTGAGCCGTTAAACGAACAACAACGAGCCGATATACACAATTTGCAGCAATCGTCTCGGCAAGCTGAAGATGCCCTTTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCACAGCATTGCCAATGATCCTCTAGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAAACTAGAAGTACTGAAGAGCTTTATAAGCCAGCCGAGTGATTGTTACAATTTTCTCGAACAGGCAGACCATCTCAGGCAAGAAACTTTGAAGAGAATGTCTCACATCCTAACCACGAAACAAGCAGCGCAAGGCTTGCTTGCTCTGGGCGAGTACTTCCACCGTCTCCGCGTTCTCAGTTCCCTCTGGTCCGCTCGACCTCGCGAACCTTCCTAG | 1167 | 45.67 | MATSPEREEYVHFTLMIGQQSMSSSSTQLCASRMGIYEPFHQFSSWGNAFGSRLESSVSPIIKVDDCVDNKPEFIPSESMDHLESSQEMNKPINDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTRQKGVYSSCVIDTGHLGFGGSVNPGIAAFETEYNHWVEEQQRQIIELRKALQLHITDIELQILVESSLKHYYNLFCMKQNAARADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKAYLEPLNEQQRADIHNLQQSSRQAEDALSQGMEKLHQNLSHSIANDPLGSYISQMGDGMEKLEVLKSFISQPSDCYNFLEQADHLRQETLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWSARPREPS | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 26572233 | 26577755 | + | MC04g1979 | Mch4g2646 | 687358 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g2646 | 388 | SMART | brlzneu | 92 | 147 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch4g2646 | 388 | Pfam | bZIP transcription factor | 95 | 134 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch4g2646 | 388 | Gene3D | - | 95 | 144 | - | - | |
Mch4g2646 | 388 | FunFam | BZIP family transcription factor | 95 | 144 | - | - | |
Mch4g2646 | 388 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 99 | 114 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch4g2646 | 388 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 94 | 138 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch4g2646 | 388 | Coils | Coil | 264 | 284 | - | - | |
Mch4g2646 | 388 | SUPERFAMILY | Leucine zipper domain | 96 | 137 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch4g2646 | 388 | Coils | Coil | 115 | 142 | - | - | |
Mch4g2646 | 388 | Pfam | Seed dormancy control | 183 | 257 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Mch4g2646 | 388 | ProSiteProfiles | DOG1 domain profile. | 165 | 383 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Mch4g2646 | 388 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 22 | 387 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0715 | Mch-Chr10:4939660 | Mch4g2646 | Mch-Chr4:26572233 | 1.71E-121 | dispersed | |
Mch3g0661 | Mch-Chr3:11100891 | Mch4g2646 | Mch-Chr4:26572233 | 3.22E-77 | dispersed | |
Mch4g2646 | Mch-Chr4:26572233 | Mch8g0171 | Mch-Chr8:1092042 | 5.62E-96 | dispersed | |
Mch4g2646 | Mch-Chr4:26572233 | Mch2g0253 | Mch-Chr2:1875375 | 1.83E-81 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43290 | PF14144 | DOG1 | 5.40E-27 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch4g2646 | K14431 | - | csv:101217648 | 646.351 |