Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0008 ATGGAAGGATCAGAAGGATCAGGGGTTCCCAATTATGAAGTTGCAGTCTCCTTCGTCTCATCAAATGCACCGCATCCGCAATCCATCCACGAAATGGGGTTTGTGCAGTTCGAAGATCATAGCCATAGCCAGGTGTTGAGCTTCCTGGCACCCAGTAACGTTAACGGCGCCACTGGGGCTACATCCACCGCCGCCATGCCTGCCGCTGCCTTCACCACGCAGCTCCTCAGTAGACCTTCTTGGAGCAACGAGCAGGTGGGAGCGCTGGATCCAAAGGCGGCCAACGACGAAAACTGCACTGGTAGCGCCAGTGATGGGAGCAATTCATGGTGGAGAAACTCGAGCGCAGATAAGAGTAAAGTGAAGGTGAGGAGAAAGCTGAGAGAGCCACGGTTCTGTTTCCAGACGAGAAGCGATGTAGATGTGCTGGATGATGGGTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCACCCTAGAAGCTACTACCGTTGTACGCATAGCAACTGTCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATTACCACGTACGAAGGTAGACACAACCACTCCCCTTGCGACGACTCCAATTCTTCCGAGCACGAACCCTTTACATCTTTCTGA 654 52.45 MEGSEGSGVPNYEVAVSFVSSNAPHPQSIHEMGFVQFEDHSHSQVLSFLAPSNVNGATGATSTAAMPAAAFTTQLLSRPSWSNEQVGALDPKAANDENCTGSASDGSNSWWRNSSADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 68392 70842 + MC05g0008 Mch5g0008 687427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0008 217 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0008 217 SMART WRKY_cls 143 202 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0008 217 FunFam WRKY transcription factor 57 129 203 - -
Mch5g0008 217 MobiDBLite consensus disorder prediction 198 217 - -
Mch5g0008 217 MobiDBLite consensus disorder prediction 91 111 - -
Mch5g0008 217 SUPERFAMILY WRKY DNA-binding domain 135 201 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0008 217 MobiDBLite consensus disorder prediction 97 111 - -
Mch5g0008 217 Gene3D WRKY domain 130 196 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0008 217 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 208 IPR044810 GO:0003700(InterPro)
Mch5g0008 217 ProSiteProfiles WRKY domain profile. 138 200 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1464 Mch-Chr2:10872866 Mch5g0008 Mch-Chr5:68392 1.99E-45 dispersed
Mch5g0008 Mch-Chr5:68392 Mch8g1391 Mch-Chr8:10352924 2.40E-35 dispersed
Mch5g0008 Mch-Chr5:68392 Mch7g1247 Mch-Chr7:15992564 3.84E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43296 PF03106 WRKY 1.30E-24 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0008 - - - 0.0