Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0008 | ATGGAAGGATCAGAAGGATCAGGGGTTCCCAATTATGAAGTTGCAGTCTCCTTCGTCTCATCAAATGCACCGCATCCGCAATCCATCCACGAAATGGGGTTTGTGCAGTTCGAAGATCATAGCCATAGCCAGGTGTTGAGCTTCCTGGCACCCAGTAACGTTAACGGCGCCACTGGGGCTACATCCACCGCCGCCATGCCTGCCGCTGCCTTCACCACGCAGCTCCTCAGTAGACCTTCTTGGAGCAACGAGCAGGTGGGAGCGCTGGATCCAAAGGCGGCCAACGACGAAAACTGCACTGGTAGCGCCAGTGATGGGAGCAATTCATGGTGGAGAAACTCGAGCGCAGATAAGAGTAAAGTGAAGGTGAGGAGAAAGCTGAGAGAGCCACGGTTCTGTTTCCAGACGAGAAGCGATGTAGATGTGCTGGATGATGGGTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCACCCTAGAAGCTACTACCGTTGTACGCATAGCAACTGTCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATTACCACGTACGAAGGTAGACACAACCACTCCCCTTGCGACGACTCCAATTCTTCCGAGCACGAACCCTTTACATCTTTCTGA | 654 | 52.45 | MEGSEGSGVPNYEVAVSFVSSNAPHPQSIHEMGFVQFEDHSHSQVLSFLAPSNVNGATGATSTAAMPAAAFTTQLLSRPSWSNEQVGALDPKAANDENCTGSASDGSNSWWRNSSADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF | 217 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 68392 | 70842 | + | MC05g0008 | Mch5g0008 | 687427 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0008 | 217 | Pfam | WRKY DNA -binding domain | 144 | 200 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0008 | 217 | SMART | WRKY_cls | 143 | 202 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0008 | 217 | FunFam | WRKY transcription factor 57 | 129 | 203 | - | - | |
Mch5g0008 | 217 | MobiDBLite | consensus disorder prediction | 198 | 217 | - | - | |
Mch5g0008 | 217 | MobiDBLite | consensus disorder prediction | 91 | 111 | - | - | |
Mch5g0008 | 217 | SUPERFAMILY | WRKY DNA-binding domain | 135 | 201 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0008 | 217 | MobiDBLite | consensus disorder prediction | 97 | 111 | - | - | |
Mch5g0008 | 217 | Gene3D | WRKY domain | 130 | 196 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0008 | 217 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 87 | 208 | IPR044810 | GO:0003700(InterPro) | |
Mch5g0008 | 217 | ProSiteProfiles | WRKY domain profile. | 138 | 200 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g1464 | Mch-Chr2:10872866 | Mch5g0008 | Mch-Chr5:68392 | 1.99E-45 | dispersed | |
Mch5g0008 | Mch-Chr5:68392 | Mch8g1391 | Mch-Chr8:10352924 | 2.40E-35 | dispersed | |
Mch5g0008 | Mch-Chr5:68392 | Mch7g1247 | Mch-Chr7:15992564 | 3.84E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43296 | PF03106 | WRKY | 1.30E-24 | CL0274 | Mch | TF |
Pathway information
