Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0008 ATGGAAGGATCAGAAGGATCAGGGGTTCCCAATTATGAAGTTGCAGTCTCCTTCGTCTCATCAAATGCACCGCATCCGCAATCCATCCACGAAATGGGGTTTGTGCAGTTCGAAGATCATAGCCATAGCCAGGTGTTGAGCTTCCTGGCACCCAGTAACGTTAACGGCGCCACTGGGGCTACATCCACCGCCGCCATGCCTGCCGCTGCCTTCACCACGCAGCTCCTCAGTAGACCTTCTTGGAGCAACGAGCAGGTGGGAGCGCTGGATCCAAAGGCGGCCAACGACGAAAACTGCACTGGTAGCGCCAGTGATGGGAGCAATTCATGGTGGAGAAACTCGAGCGCAGATAAGAGTAAAGTGAAGGTGAGGAGAAAGCTGAGAGAGCCACGGTTCTGTTTCCAGACGAGAAGCGATGTAGATGTGCTGGATGATGGGTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCACCCTAGAAGCTACTACCGTTGTACGCATAGCAACTGTCGAGTGAAGAAGAGGGTGGAGCGACTGTCGGAGGATTGCCGGATGGTGATTACCACGTACGAAGGTAGACACAACCACTCCCCTTGCGACGACTCCAATTCTTCCGAGCACGAACCCTTTACATCTTTCTGA 654 52.45 MEGSEGSGVPNYEVAVSFVSSNAPHPQSIHEMGFVQFEDHSHSQVLSFLAPSNVNGATGATSTAAMPAAAFTTQLLSRPSWSNEQVGALDPKAANDENCTGSASDGSNSWWRNSSADKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHEPFTSF 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 68392 70842 + MC05g0008 Mch5g0008 687427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0008 217 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0008 217 SMART WRKY_cls 143 202 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0008 217 FunFam WRKY transcription factor 57 129 203 - -
Mch5g0008 217 MobiDBLite consensus disorder prediction 198 217 - -
Mch5g0008 217 MobiDBLite consensus disorder prediction 91 111 - -
Mch5g0008 217 SUPERFAMILY WRKY DNA-binding domain 135 201 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0008 217 MobiDBLite consensus disorder prediction 97 111 - -
Mch5g0008 217 Gene3D WRKY domain 130 196 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0008 217 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 87 208 IPR044810 GO:0003700(InterPro)
Mch5g0008 217 ProSiteProfiles WRKY domain profile. 138 200 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0008 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1464 Mch-Chr2:10872866 Mch5g0008 Mch-Chr5:68392 1.99E-45 dispersed
Mch5g0008 Mch-Chr5:68392 Mch8g1391 Mch-Chr8:10352924 2.40E-35 dispersed
Mch5g0008 Mch-Chr5:68392 Mch7g1247 Mch-Chr7:15992564 3.84E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g1725 . 183 457 WRKY Transcription Factor Family AT4G12020 51.6 1.3e-59 229.6
Mch4g0341 . 101 350 WRKY Transcription Factor Family AT2G04880 56.9 3.4e-78 289.3
Mch3g0043 . 241 483 WRKY Transcription Factor Family AT5G56270 53.2 1.4e-67 254.6
Mch9g2095 . 17 497 WRKY Transcription Factor Family AT2G03340 53.5 2.5e-122 436.0
Mch4g2348 . 12 505 WRKY Transcription Factor Family AT2G03340 52.0 4.2e-117 418.7
Mch3g0043 . 235 502 WRKY Transcription Factor Family AT2G03340 51.8 8.2e-65 245.0
Mch9g2095 . 114 497 WRKY Transcription Factor Family AT1G13960 54.9 1.0e-98 357.1
Mch4g2348 . 140 505 WRKY Transcription Factor Family AT1G13960 50.6 3.1e-82 302.4
Mch3g0043 . 237 509 WRKY Transcription Factor Family AT1G13960 50.3 3.3e-68 255.8
Mch4g1725 . 183 457 WRKY Transcription Factor Family AT4G12020 51.6 1.3e-59 229.6
Mch3g0043 . 238 482 WRKY Transcription Factor Family AT5G07100 57.5 9.8e-68 253.4
Mch2g0805 . 125 340 WRKY Transcription Factor Family AT5G07100 51.6 3.6e-54 208.4
Mch6g0623 . 173 509 WRKY Transcription Factor Family AT4G30935 60.2 3.3e-105 379.0
Mch3g0043 . 239 582 WRKY Transcription Factor Family AT2G38470 58.6 8.2e-97 351.3
Mch9g2095 . 204 451 WRKY Transcription Factor Family AT2G38470 54.1 7.5e-66 248.4
Mch4g2348 . 233 468 WRKY Transcription Factor Family AT2G38470 53.5 1.2e-63 241.1
Mch2g0805 . 126 339 WRKY Transcription Factor Family AT2G38470 53.5 1.8e-59 227.3
Mch3g0043 . 241 483 WRKY Transcription Factor Family AT4G26440 50.8 3.8e-63 239.6
Mch5g0954 . 99 205 WRKY Transcription Factor Family AT3G01970 68.2 8.5e-39 156.8
Mch8g1391 . 85 176 WRKY Transcription Factor Family AT3G01970 78.3 8.5e-39 156.8
Mch4g0252 . 58 491 WRKY Transcription Factor Family AT1G62300 52.0 1.3e-100 364.0
Mch6g0215 . 172 328 WRKY Transcription Factor Family AT1G62300 57.3 9.9e-40 161.8
Mch10g0518 . 233 321 WRKY Transcription Factor Family AT1G62300 80.9 1.6e-37 154.5
Mch10g0518 . 88 337 WRKY Transcription Factor Family AT1G68150 54.3 4.6e-57 218.8
Mch6g0215 . 172 299 WRKY Transcription Factor Family AT1G68150 66.2 1.2e-41 167.5
Mch1g1738 . 341 438 WRKY Transcription Factor Family AT1G68150 74.5 9.0e-37 151.4
Mch1g1738 . 43 585 WRKY Transcription Factor Family AT4G22070 53.0 1.3e-113 407.1
Mch4g0252 . 58 470 WRKY Transcription Factor Family AT4G22070 51.1 1.4e-94 344.0
Mch10g0518 . 225 316 WRKY Transcription Factor Family AT4G22070 80.4 9.0e-38 155.2
Mch6g0215 . 172 328 WRKY Transcription Factor Family AT4G22070 57.3 1.7e-36 151.0
Mch1g1738 . 139 586 WRKY Transcription Factor Family AT4G04450 50.5 3.2e-94 342.4
Mch4g0252 . 75 471 WRKY Transcription Factor Family AT4G04450 53.4 1.3e-92 337.0
Mch6g0215 . 172 328 WRKY Transcription Factor Family AT4G04450 58.6 8.6e-39 158.3
Mch1g1738 . 340 480 WRKY Transcription Factor Family AT1G18860 58.9 9.7e-37 151.8
Mch1g1999 . 127 294 WRKY Transcription Factor Family AT5G46350 51.1 1.8e-36 150.2
Mch5g0008 . 87 218 WRKY Transcription Factor Family AT2G44745 74.1 4.0e-53 204.9
Mch1g1067 . 119 205 WRKY Transcription Factor Family AT2G44745 80.5 3.6e-38 155.2
Mch2g1464 . 147 233 WRKY Transcription Factor Family AT2G44745 81.6 4.0e-37 151.8
Mch1g1067 . 114 224 WRKY Transcription Factor Family AT4G39410 73.9 1.2e-42 170.6
Mch8g2124 . 108 298 WRKY Transcription Factor Family AT2G47260 51.8 3.2e-41 166.0
Mch7g1247 . 131 306 WRKY Transcription Factor Family AT2G47260 51.3 1.8e-36 150.2
Mch10g0840 . 81 186 WRKY Transcription Factor Family AT5G41570 77.4 4.8e-44 174.5
Mch4g0053 . 144 228 WRKY Transcription Factor Family AT4G18170 83.5 5.3e-38 155.2
Mch8g2124 . 96 196 WRKY Transcription Factor Family AT4G18170 71.3 7.7e-37 151.4
Mch5g0780 . 140 300 WRKY Transcription Factor Family AT5G49520 52.1 4.9e-41 165.6
Mch9g0642 . 83 224 WRKY Transcription Factor Family AT5G49520 56.3 3.3e-37 152.9
Mch1g1999 . 87 213 WRKY Transcription Factor Family AT5G49520 59.8 9.6e-37 151.4
Mch10g0840 . 27 188 WRKY Transcription Factor Family AT1G64000 56.2 1.4e-44 176.4
Mch7g1247 . 124 217 WRKY Transcription Factor Family AT1G69310 75.5 1.4e-37 153.7
Mch2g0722 . 121 279 WRKY Transcription Factor Family AT1G29860 53.3 4.6e-41 165.2
Mch4g0053 . 144 226 WRKY Transcription Factor Family AT1G29860 84.3 1.4e-37 153.7
Mch5g0954 . 111 207 WRKY Transcription Factor Family AT5G13080 85.6 4.6e-45 177.6
Mch8g1391 . 73 178 WRKY Transcription Factor Family AT5G13080 78.3 2.1e-42 168.7
Mch11g0325 . 10 297 WRKY Transcription Factor Family AT4G24240 50.7 1.2e-60 230.3
Mch11g0630 . 1 293 WRKY Transcription Factor Family AT4G31550 62.3 3.0e-87 318.5
Mch6g0480 . 1 260 WRKY Transcription Factor Family AT4G31550 51.1 8.9e-55 210.7
Mch11g0630 . 1 351 WRKY Transcription Factor Family AT2G24570 61.5 5.3e-110 394.4
Mch6g0480 . 1 302 WRKY Transcription Factor Family AT2G24570 53.9 1.5e-72 270.0
Mch9g0924 . 221 327 WRKY Transcription Factor Family AT2G24570 64.0 4.0e-41 165.6
Mch9g0924 . 1 338 WRKY Transcription Factor Family AT2G30590 50.6 1.3e-86 317.0
Mch11g0325 . 175 334 WRKY Transcription Factor Family AT2G30590 59.9 7.5e-47 184.9
Mch1g1230 . 204 310 WRKY Transcription Factor Family AT2G30590 77.1 1.6e-44 177.2
Mch2g1266 . 150 277 WRKY Transcription Factor Family AT2G30590 68.0 2.7e-44 176.4
Mch6g0480 . 136 299 WRKY Transcription Factor Family AT2G30590 53.5 5.0e-43 172.2
Mch11g0630 . 169 330 WRKY Transcription Factor Family AT2G30590 55.5 1.6e-41 167.2
Mch9g0924 . 1 338 WRKY Transcription Factor Family AT5G28650 52.9 3.2e-78 288.9
Mch6g2000 . 1 325 WRKY Transcription Factor Family AT5G28650 51.3 2.7e-77 285.8
Mch1g1230 . 158 311 WRKY Transcription Factor Family AT5G28650 60.4 2.0e-43 173.3
Mch2g1266 . 176 279 WRKY Transcription Factor Family AT5G28650 75.0 3.1e-41 166.0
Mch3g0875 . 152 278 WRKY Transcription Factor Family AT1G30650 82.7 5.8e-56 215.3
Mch5g0423 . 113 209 WRKY Transcription Factor Family AT1G30650 64.5 1.8e-36 150.6
Mch3g0875 . 165 275 WRKY Transcription Factor Family AT2G34830 92.8 1.3e-55 214.2
Mch5g0423 . 119 209 WRKY Transcription Factor Family AT2G34830 70.3 2.8e-37 153.3
Mch3g1057 . 70 257 WRKY Transcription Factor Family AT1G29280 54.5 8.4e-50 194.1
Mch4g0134 . 11 293 WRKY Transcription Factor Family AT3G58710 53.4 4.8e-48 188.3
Mch4g0341 . 101 350 WRKY Transcription Factor Family AT2G04880 56.9 3.4e-78 289.3
Mch11g0630 . 1 293 WRKY Transcription Factor Family AT4G31550 62.3 3.0e-87 318.5
Mch6g0480 . 1 260 WRKY Transcription Factor Family AT4G31550 51.1 8.9e-55 210.7
Mch5g0008 . 87 218 WRKY Transcription Factor Family AT2G44745 74.1 4.0e-53 204.9
Mch1g1067 . 119 205 WRKY Transcription Factor Family AT2G44745 80.5 3.6e-38 155.2
Mch2g1464 . 147 233 WRKY Transcription Factor Family AT2G44745 81.6 4.0e-37 151.8
Mch1g1067 . 114 224 WRKY Transcription Factor Family AT4G39410 73.9 1.2e-42 170.6
Mch3g0875 . 152 278 WRKY Transcription Factor Family AT1G30650 82.7 5.8e-56 215.3
Mch5g0423 . 113 209 WRKY Transcription Factor Family AT1G30650 64.5 1.8e-36 150.6
Mch11g0630 . 1 351 WRKY Transcription Factor Family AT2G24570 61.5 5.3e-110 394.4
Mch6g0480 . 1 302 WRKY Transcription Factor Family AT2G24570 53.9 1.5e-72 270.0
Mch9g0924 . 221 327 WRKY Transcription Factor Family AT2G24570 64.0 4.0e-41 165.6
Mch4g1725 . 183 457 WRKY Transcription Factor Family AT4G12020 51.6 1.3e-59 229.6
Mch3g0043 . 241 483 WRKY Transcription Factor Family AT5G56270 53.2 1.4e-67 254.6
Mch9g0924 . 1 338 WRKY Transcription Factor Family AT2G30590 50.6 1.3e-86 317.0
Mch11g0325 . 175 334 WRKY Transcription Factor Family AT2G30590 59.9 7.5e-47 184.9
Mch1g1230 . 204 310 WRKY Transcription Factor Family AT2G30590 77.1 1.6e-44 177.2
Mch2g1266 . 150 277 WRKY Transcription Factor Family AT2G30590 68.0 2.7e-44 176.4
Mch6g0480 . 136 299 WRKY Transcription Factor Family AT2G30590 53.5 5.0e-43 172.2
Mch11g0630 . 169 330 WRKY Transcription Factor Family AT2G30590 55.5 1.6e-41 167.2
Mch8g2124 . 108 298 WRKY Transcription Factor Family AT2G47260 51.8 3.2e-41 166.0
Mch7g1247 . 131 306 WRKY Transcription Factor Family AT2G47260 51.3 1.8e-36 150.2
Mch10g0840 . 81 186 WRKY Transcription Factor Family AT5G41570 77.4 4.8e-44 174.5
Mch3g0043 . 238 482 WRKY Transcription Factor Family AT5G07100 57.5 9.8e-68 253.4
Mch2g0805 . 125 340 WRKY Transcription Factor Family AT5G07100 51.6 3.6e-54 208.4
Mch4g0053 . 144 228 WRKY Transcription Factor Family AT4G18170 83.5 5.3e-38 155.2
Mch8g2124 . 96 196 WRKY Transcription Factor Family AT4G18170 71.3 7.7e-37 151.4
Mch9g2095 . 17 497 WRKY Transcription Factor Family AT2G03340 53.5 2.5e-122 436.0
Mch4g2348 . 12 505 WRKY Transcription Factor Family AT2G03340 52.0 4.2e-117 418.7
Mch3g0043 . 235 502 WRKY Transcription Factor Family AT2G03340 51.8 8.2e-65 245.0
Mch1g1738 . 43 585 WRKY Transcription Factor Family AT4G22070 53.0 1.3e-113 407.1
Mch4g0252 . 58 470 WRKY Transcription Factor Family AT4G22070 51.1 1.4e-94 344.0
Mch10g0518 . 225 316 WRKY Transcription Factor Family AT4G22070 80.4 9.0e-38 155.2
Mch6g0215 . 172 328 WRKY Transcription Factor Family AT4G22070 57.3 1.7e-36 151.0
Mch6g0623 . 173 509 WRKY Transcription Factor Family AT4G30935 60.2 3.3e-105 379.0
Mch3g0043 . 239 582 WRKY Transcription Factor Family AT2G38470 58.6 8.2e-97 351.3
Mch9g2095 . 204 451 WRKY Transcription Factor Family AT2G38470 54.1 7.5e-66 248.4
Mch4g2348 . 233 468 WRKY Transcription Factor Family AT2G38470 53.5 1.2e-63 241.1
Mch2g0805 . 126 339 WRKY Transcription Factor Family AT2G38470 53.5 1.8e-59 227.3
Mch3g0043 . 241 483 WRKY Transcription Factor Family AT4G26440 50.8 3.8e-63 239.6
Mch3g0875 . 165 275 WRKY Transcription Factor Family AT2G34830 92.8 1.3e-55 214.2
Mch5g0423 . 119 209 WRKY Transcription Factor Family AT2G34830 70.3 2.8e-37 153.3
Mch9g2095 . 114 497 WRKY Transcription Factor Family AT1G13960 54.9 1.0e-98 357.1
Mch4g2348 . 140 505 WRKY Transcription Factor Family AT1G13960 50.6 3.1e-82 302.4
Mch3g0043 . 237 509 WRKY Transcription Factor Family AT1G13960 50.3 3.3e-68 255.8
Mch1g1738 . 139 586 WRKY Transcription Factor Family AT4G04450 50.5 3.2e-94 342.4
Mch4g0252 . 75 471 WRKY Transcription Factor Family AT4G04450 53.4 1.3e-92 337.0
Mch6g0215 . 172 328 WRKY Transcription Factor Family AT4G04450 58.6 8.6e-39 158.3
Mch5g0954 . 99 205 WRKY Transcription Factor Family AT3G01970 68.2 8.5e-39 156.8
Mch8g1391 . 85 176 WRKY Transcription Factor Family AT3G01970 78.3 8.5e-39 156.8
Mch5g0780 . 140 300 WRKY Transcription Factor Family AT5G49520 52.1 4.9e-41 165.6
Mch9g0642 . 83 224 WRKY Transcription Factor Family AT5G49520 56.3 3.3e-37 152.9
Mch1g1999 . 87 213 WRKY Transcription Factor Family AT5G49520 59.8 9.6e-37 151.4
Mch10g0840 . 27 188 WRKY Transcription Factor Family AT1G64000 56.2 1.4e-44 176.4
Mch7g1247 . 124 217 WRKY Transcription Factor Family AT1G69310 75.5 1.4e-37 153.7
Mch4g0252 . 58 491 WRKY Transcription Factor Family AT1G62300 52.0 1.3e-100 364.0
Mch6g0215 . 172 328 WRKY Transcription Factor Family AT1G62300 57.3 9.9e-40 161.8
Mch10g0518 . 233 321 WRKY Transcription Factor Family AT1G62300 80.9 1.6e-37 154.5
Mch1g1738 . 340 480 WRKY Transcription Factor Family AT1G18860 58.9 9.7e-37 151.8
Mch3g1057 . 70 257 WRKY Transcription Factor Family AT1G29280 54.5 8.4e-50 194.1
Mch4g0134 . 11 293 WRKY Transcription Factor Family AT3G58710 53.4 4.8e-48 188.3
Mch11g0325 . 10 297 WRKY Transcription Factor Family AT4G24240 50.7 1.2e-60 230.3
Mch2g0722 . 121 279 WRKY Transcription Factor Family AT1G29860 53.3 4.6e-41 165.2
Mch4g0053 . 144 226 WRKY Transcription Factor Family AT1G29860 84.3 1.4e-37 153.7
Mch9g0924 . 1 338 WRKY Transcription Factor Family AT5G28650 52.9 3.2e-78 288.9
Mch6g2000 . 1 325 WRKY Transcription Factor Family AT5G28650 51.3 2.7e-77 285.8
Mch1g1230 . 158 311 WRKY Transcription Factor Family AT5G28650 60.4 2.0e-43 173.3
Mch2g1266 . 176 279 WRKY Transcription Factor Family AT5G28650 75.0 3.1e-41 166.0
Mch5g0954 . 111 207 WRKY Transcription Factor Family AT5G13080 85.6 4.6e-45 177.6
Mch8g1391 . 73 178 WRKY Transcription Factor Family AT5G13080 78.3 2.1e-42 168.7
Mch1g1999 . 127 294 WRKY Transcription Factor Family AT5G46350 51.1 1.8e-36 150.2
Mch10g0518 . 88 337 WRKY Transcription Factor Family AT1G68150 54.3 4.6e-57 218.8
Mch6g0215 . 172 299 WRKY Transcription Factor Family AT1G68150 66.2 1.2e-41 167.5
Mch1g1738 . 341 438 WRKY Transcription Factor Family AT1G68150 74.5 9.0e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012883 1 1 0 1 2 1 2 0 0 1 0 0 1 1 1 1 0 3 1 0 1 1 1 1 1 1 1 2 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43296 PF03106 WRKY 1.30E-24 CL0274 Mch TF