Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0012 ATGGAGAGGATTCCAGAGTCAAAAGCACTTCCATTATTATTGCCCATAGAGTTGGTTCCAGAATCGAAGGTACTTGCAGGTAAATTTTGTGTTTTGGATGATGTACCAATAGCACATGTGGCGTCAGCCAAGCAAGCAGGCCATTGGTCGGACATGCACTCAGCTAAGGTAAGAGAAGCGGGAAGATCCACTGGACAAGGATTTCAAGATCCAGAAGTTTCTGTACCTATACGGACATTAAAGGGAAAATCCTCTTTTTTGGGGCAGGAAGAACCTAAGCGTGATGTCACATTAAAGGGTAGTAGCAATTTAATTGAGGAAGGTGGTCCAAGTTCCTTCTCTGGGGCTAGCCACCCCCCAGAGCCTGTGGATATGGATCTGATGAGAACTGTTTATGTACCCCTGAGGCAAAATAAATCTGACGCTAGCTGCTTGATCAAGAGTTTTTCCGTGAAGGGCCCTTTTCTTGAGGATCTTTCAATCAGGGTTCCAGCCAAGAAACCATTCCAAGCTGCTCTCTCCCCTGCAGAAAGCTTAGTCGATGAACCACATGACTTGGGTGTTTTATCTTCCCCCTTTTCAGTTCCTCGTGCATCACAAAATACAGAAACTTCTCTCCTTCCCCCAGATTCCGAGGAAAAGGAATGTGTTTGGGATGCTTCTTTGCCCCCGAGTGGTAATGTAAGTCCACTCAGTAGCATTGACAGTAGTGGAGTTGTCACAGCTATGAGCATTGTCAATAGTTGTGCTAGCACATATCGAAGTGATGGAATGGTTAGCATTGAAAGAAACTGTGAGAGTACAAAAGGAAGCATTAGAGGGGACTCTCTTGAGAGTGCAAAAACAAGTATTAGTCGAGCTAGTGATAGCAGTGGTCTTAGTGATGATAGTAGTTGGAGCAACATCACAGGAAGTGCTAATAAGCCCCACAAAGGAAACGATCCTAGGTGGAAAGCCATTCTTGCTATTCGAGCAAGAGATGGAATATTAGGCATGAGTCATTTTAGACTGCTGAAGAGACTTGGCTGTGGTGATATTGGTAGTGTTTATCTCTCAGAGCTAAGTGGGACTCGCTGTTACTTTGCCATGAAAGTAATGGATAAGGCATCGCTTGCTATCAGGAAGAAGCTGACGAGGGCTCAGACAGAAAGGGAGATATTGCAGTTACTTGACCATCCATTTCTCCCGACTTTGTACACCCACTTTGAGACTGACAGATTTTCCTGTCTAGTAATGGAATATTGTCCTGGGGGCGACCTGCACACTTTGAGGCAACGACAACCGGGGAAACACTTCTCTGAGTATGCTGCAAGGTTTTATGCAGCAGAGGTTCTACTGGCACTCGAATATCTTCACATGCTTGGAGTTGTTTATAGGGACTTGAAACCAGAGAATGTACTGGTTCGTGATGATGGCCACATAATGCTCTCAGATTTCGACCTTTCACTAAGATGTGCAGTGTCACCCACCCTGATAAAGACCTCATACGATTCTGACCCATCAAAACGAGCTGCATTTTGTGTCCAGCCTGCTTGTATTGAGCCGTCATCAGTATGCATCCAACCTGCATGCTTTCTTCCTCGCCTCTTCCCTCAGAAAAGTAAAAAGAAAAGTCCCAAGCCTCGGAGTGAGTTGGGGTTGCAATCCAGTACACTTCCTGAGCTTGTAGCGGAGCCTACTGCTGCCCGATCCATGTCTTTTGTTGGCACCCATGAATACCTAGCCCCTGAAATAATTAAAGGAGAAGGTCATGGAAGTGCTGTTGATTGGTGGACTTTTGGCATTTTCTTGCATGAACTATTATATGGAAAAACCCCATTCAAGGGATCAGGAAACAGAGCCACACTATTCAATGTAGTAGGGCAGCAACTGAAGTTCCCAGAGTCTCCAGCAACTAGTTATGCTAGCCGAGATCTTATACGGGGTTTACTAGTAAAGGAGCCACAGCATCGGCTCGGAGTGAAGAGGGGTGCAACTGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTCAATTGGGCTTTGATTCGATGCAGCACGCCCCCAGAAGTGCCAAGACCAATGGAGGCCGAGCTGCCTAAGTTTGGGGTAGTTGACACAACAGGGGTTGGCAGCAGCAGTAAGAGGATGGTAGGGACGGATGTTGTTAAAGCTGGTGGTCAATATCTTGATTTCGAGTTCTTTTAA 2184 45.92 MERIPESKALPLLLPIELVPESKVLAGKFCVLDDVPIAHVASAKQAGHWSDMHSAKVREAGRSTGQGFQDPEVSVPIRTLKGKSSFLGQEEPKRDVTLKGSSNLIEEGGPSSFSGASHPPEPVDMDLMRTVYVPLRQNKSDASCLIKSFSVKGPFLEDLSIRVPAKKPFQAALSPAESLVDEPHDLGVLSSPFSVPRASQNTETSLLPPDSEEKECVWDASLPPSGNVSPLSSIDSSGVVTAMSIVNSCASTYRSDGMVSIERNCESTKGSIRGDSLESAKTSISRASDSSGLSDDSSWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAIRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLIKTSYDSDPSKRAAFCVQPACIEPSSVCIQPACFLPRLFPQKSKKKSPKPRSELGLQSSTLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPMEAELPKFGVVDTTGVGSSSKRMVGTDVVKAGGQYLDFEFF 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 79991 87453 - MC05g0011 Mch5g0012 687431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0012 727 Gene3D Transferase(Phosphotransferase) domain 1 419 490 - -
Mch5g0012 727 MobiDBLite consensus disorder prediction 269 308 - -
Mch5g0012 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0012 727 ProSiteProfiles Protein kinase domain profile. 335 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0012 727 Pfam Protein kinase domain 564 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0012 727 Pfam Protein kinase domain 336 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0012 727 MobiDBLite consensus disorder prediction 191 214 - -
Mch5g0012 727 Gene3D Transferase(Phosphotransferase) domain 1 563 684 - -
Mch5g0012 727 FunFam serine/threonine-protein kinase D6PK-like 562 685 - -
Mch5g0012 727 MobiDBLite consensus disorder prediction 193 207 - -
Mch5g0012 727 FunFam Serine/threonine-protein kinase D6PK-like 333 418 - -
Mch5g0012 727 SUPERFAMILY Protein kinase-like (PK-like) 317 691 IPR011009 -
Mch5g0012 727 PANTHER FLIPPASE KINASE 1-RELATED 211 688 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch5g0012 727 SMART serkin_6 335 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0012 727 Gene3D Phosphorylase Kinase; domain 1 333 418 - -
Mch5g0012 727 MobiDBLite consensus disorder prediction 269 312 - -
Mch5g0012 727 CDD STKc_phototropin_like 333 686 - -
Mch5g0012 727 FunFam serine/threonine-protein kinase D6PK-like 419 486 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0265 Mch-Chr2:1980006 Mch5g0012 Mch-Chr5:79991 8.55E-130 dispersed
Mch5g0012 Mch-Chr5:79991 Mch8g1468 Mch-Chr8:10997803 2.31E-215 dispersed
Mch5g0012 Mch-Chr5:79991 Mch3g0725 Mch-Chr3:11538666 1.11E-227 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77381 PF00069 Pkinase 5.40E-36 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0012 - - - 0.0