Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0018 | ATGGGGAAGAAGGGAGGAACCTCCTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGACGACGACGAGAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCGAGACGGCGTCGAAGGCGAGCACGGAGCATGCATCTAATTCGGAGGCGGCGCTTGCTGTTGCGGTGGCAACTGCAGAAGCTGCAATGGCCACGGCGCAAGCGGCTGTGGAGGTCGCTCGCCTCACCACCAGGCCCAATTCCAACCATGCCAGAGGAGACCACTACGCTGCAATTGTGATTCAGACTGCGTTTAGAGGATACCTGGCAAGGAGGGCTCTGCGCGCGCTGAAGGGGCTGGTGAAGTTGCAGGCTCTGGTGAGGGGTCACAACGTGAGAAAGCAGGCGAAGATGACCCTCCGATGCATGCAGGCTCTGGTTCGAGTCCAAGCCCGTGTTCTTGATCAACGGATGAGACTCTCCCACGACGGCAGCAGAAAATCCACCTTCGCCTTCAGCGACACCAATACCGTCATTGGAGTTGGTTCGCGCTACCTTCATAACTTCTCTGACAGAAAATCTACTTCTCAGTCGAGGGAGGGAAGTAGCAGCATTGCGGACGACTGGGATGAATGTCCCCACACTATTGAAGAAGTGAAAGCTATGCTCCAACATAGAAAAGAGATTGCGATGAAGCGTGATAGGAATCTCTCCCACGCCTTCTCCCAACAGATATGGCGTAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGACGAGCTGGAAGAAAGACCCAAGTGGCTGGATCAATGGAATTCCAGGAAGCCATGGGAAAACAGGGGAAGAGCTTCAACGGATCAGAGAGATCCCATCAAAACGGTTGAAATTGACACTTTCCAGCCCTACTCTCACGCATCAATCAACTTCCGGAGAACGGCGACTCAGAATCAACAAAGATCAAATCCGCATTCCGGCAGCTCCCCACTCCACAGAACGCAACAGAGCATGCCCTGTTTCCACCCCTCCCCGGCCACGCCCTCCCCGTCCAAAACCAGGCCTCTCCAAGTCCGCTCTGCAAGTCCACGTTTCGTGAGAGACGACAAGAGCGAGAATACATCGCAAACACCAAGTTTAAGGTCAAACTACTACTACAGTGGCAATCTGCTTCAACAGAGTAAGATTGGAGGGAGTAGCAGTCATAATCAAGGCAATTGTTTGCCCAATTACATGGCCGCCACGGAGTCTGCAAAAGCCCGAGTACGGTCGCAGAGCGCCCCGAGGCAGAGGCCGTCGACTCCGGAGAGGGAGAGGGCAGTTGGGTCAGCAAAGAAGCGGCTGTCATTCCCAGTTCCGGACCCAACTGGGTATGGAGGAGCTTACGAGCGTAATTTGAGGAGTCCAAGCTTCAAGAGCGTGAGCGGGACATACTTGGGGGTGGAGCAGCAATCCAACTATTCATCCTGCTGCACAGACAGTCTCGGCGGAGAGATTTCCCCATCTTCAACCAGTGACCTAAGAAGGTGGCTAAGGTGA | 1524 | 54.27 | MGKKGGTSWLTAVKRAFRSPSKDDDEKKREKRRWIFRRSETASKASTEHASNSEAALAVAVATAEAAMATAQAAVEVARLTTRPNSNHARGDHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFAFSDTNTVIGVGSRYLHNFSDRKSTSQSREGSSSIADDWDECPHTIEEVKAMLQHRKEIAMKRDRNLSHAFSQQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSHASINFRRTATQNQQRSNPHSGSSPLHRTQQSMPCFHPSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSKIGGSSSHNQGNCLPNYMAATESAKARVRSQSAPRQRPSTPERERAVGSAKKRLSFPVPDPTGYGGAYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTSDLRRWLR | 507 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 147548 | 150875 | - | MC05g0016 | Mch5g0018 | 687437 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0018 | 507 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Mch5g0018 | 507 | SMART | iq_5 | 91 | 113 | IPR000048 | GO:0005515(InterPro) | |
Mch5g0018 | 507 | SMART | iq_5 | 114 | 135 | IPR000048 | GO:0005515(InterPro) | |
Mch5g0018 | 507 | MobiDBLite | consensus disorder prediction | 411 | 461 | - | - | |
Mch5g0018 | 507 | Gene3D | - | 92 | 145 | - | - | |
Mch5g0018 | 507 | MobiDBLite | consensus disorder prediction | 296 | 337 | - | - | |
Mch5g0018 | 507 | MobiDBLite | consensus disorder prediction | 241 | 378 | - | - | |
Mch5g0018 | 507 | MobiDBLite | consensus disorder prediction | 252 | 290 | - | - | |
Mch5g0018 | 507 | ProSiteProfiles | IQ motif profile. | 92 | 120 | - | - | |
Mch5g0018 | 507 | MobiDBLite | consensus disorder prediction | 485 | 507 | - | - | |
Mch5g0018 | 507 | FunFam | IQ-domain 11 | 91 | 142 | - | - | |
Mch5g0018 | 507 | PANTHER | IQ-DOMAIN 5-RELATED | 9 | 438 | - | - | |
Mch5g0018 | 507 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Mch5g0018 | 507 | ProSiteProfiles | IQ motif profile. | 116 | 143 | - | - | |
Mch5g0018 | 507 | Pfam | IQ calmodulin-binding motif | 119 | 135 | IPR000048 | GO:0005515(InterPro) | |
Mch5g0018 | 507 | Pfam | IQ calmodulin-binding motif | 95 | 113 | IPR000048 | GO:0005515(InterPro) | |
Mch5g0018 | 507 | Pfam | Protein of unknown function (DUF4005) | 357 | 458 | IPR025064 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0175 | Mch-Chr10:1049417 | Mch5g0018 | Mch-Chr5:147548 | 1.99E-24 | dispersed | |
Mch10g1801 | Mch-Chr10:17704495 | Mch5g0018 | Mch-Chr5:147548 | 1.58E-11 | dispersed | |
Mch5g0018 | Mch-Chr5:147548 | Mch7g0083 | Mch-Chr7:896691 | 4.35E-20 | dispersed | |
Mch8g0835 | Mch-Chr8:5928405 | Mch5g0018 | Mch-Chr5:147548 | 2.67E-06 | dispersed | |
Mch5g0018 | Mch-Chr5:147548 | Mch4g2077 | Mch-Chr4:22941834 | 1.17E-38 | transposed |
Pathway information
