Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0018 ATGGGGAAGAAGGGAGGAACCTCCTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGACGACGACGAGAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCGAGACGGCGTCGAAGGCGAGCACGGAGCATGCATCTAATTCGGAGGCGGCGCTTGCTGTTGCGGTGGCAACTGCAGAAGCTGCAATGGCCACGGCGCAAGCGGCTGTGGAGGTCGCTCGCCTCACCACCAGGCCCAATTCCAACCATGCCAGAGGAGACCACTACGCTGCAATTGTGATTCAGACTGCGTTTAGAGGATACCTGGCAAGGAGGGCTCTGCGCGCGCTGAAGGGGCTGGTGAAGTTGCAGGCTCTGGTGAGGGGTCACAACGTGAGAAAGCAGGCGAAGATGACCCTCCGATGCATGCAGGCTCTGGTTCGAGTCCAAGCCCGTGTTCTTGATCAACGGATGAGACTCTCCCACGACGGCAGCAGAAAATCCACCTTCGCCTTCAGCGACACCAATACCGTCATTGGAGTTGGTTCGCGCTACCTTCATAACTTCTCTGACAGAAAATCTACTTCTCAGTCGAGGGAGGGAAGTAGCAGCATTGCGGACGACTGGGATGAATGTCCCCACACTATTGAAGAAGTGAAAGCTATGCTCCAACATAGAAAAGAGATTGCGATGAAGCGTGATAGGAATCTCTCCCACGCCTTCTCCCAACAGATATGGCGTAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGACGAGCTGGAAGAAAGACCCAAGTGGCTGGATCAATGGAATTCCAGGAAGCCATGGGAAAACAGGGGAAGAGCTTCAACGGATCAGAGAGATCCCATCAAAACGGTTGAAATTGACACTTTCCAGCCCTACTCTCACGCATCAATCAACTTCCGGAGAACGGCGACTCAGAATCAACAAAGATCAAATCCGCATTCCGGCAGCTCCCCACTCCACAGAACGCAACAGAGCATGCCCTGTTTCCACCCCTCCCCGGCCACGCCCTCCCCGTCCAAAACCAGGCCTCTCCAAGTCCGCTCTGCAAGTCCACGTTTCGTGAGAGACGACAAGAGCGAGAATACATCGCAAACACCAAGTTTAAGGTCAAACTACTACTACAGTGGCAATCTGCTTCAACAGAGTAAGATTGGAGGGAGTAGCAGTCATAATCAAGGCAATTGTTTGCCCAATTACATGGCCGCCACGGAGTCTGCAAAAGCCCGAGTACGGTCGCAGAGCGCCCCGAGGCAGAGGCCGTCGACTCCGGAGAGGGAGAGGGCAGTTGGGTCAGCAAAGAAGCGGCTGTCATTCCCAGTTCCGGACCCAACTGGGTATGGAGGAGCTTACGAGCGTAATTTGAGGAGTCCAAGCTTCAAGAGCGTGAGCGGGACATACTTGGGGGTGGAGCAGCAATCCAACTATTCATCCTGCTGCACAGACAGTCTCGGCGGAGAGATTTCCCCATCTTCAACCAGTGACCTAAGAAGGTGGCTAAGGTGA 1524 54.27 MGKKGGTSWLTAVKRAFRSPSKDDDEKKREKRRWIFRRSETASKASTEHASNSEAALAVAVATAEAAMATAQAAVEVARLTTRPNSNHARGDHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFAFSDTNTVIGVGSRYLHNFSDRKSTSQSREGSSSIADDWDECPHTIEEVKAMLQHRKEIAMKRDRNLSHAFSQQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSHASINFRRTATQNQQRSNPHSGSSPLHRTQQSMPCFHPSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSKIGGSSSHNQGNCLPNYMAATESAKARVRSQSAPRQRPSTPERERAVGSAKKRLSFPVPDPTGYGGAYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTSDLRRWLR 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 147548 150875 - MC05g0016 Mch5g0018 687437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0018 507 MobiDBLite consensus disorder prediction 17 32 - -
Mch5g0018 507 SMART iq_5 91 113 IPR000048 GO:0005515(InterPro)
Mch5g0018 507 SMART iq_5 114 135 IPR000048 GO:0005515(InterPro)
Mch5g0018 507 MobiDBLite consensus disorder prediction 411 461 - -
Mch5g0018 507 Gene3D - 92 145 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 296 337 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 241 378 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 252 290 - -
Mch5g0018 507 ProSiteProfiles IQ motif profile. 92 120 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 485 507 - -
Mch5g0018 507 FunFam IQ-domain 11 91 142 - -
Mch5g0018 507 PANTHER IQ-DOMAIN 5-RELATED 9 438 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 1 32 - -
Mch5g0018 507 ProSiteProfiles IQ motif profile. 116 143 - -
Mch5g0018 507 Pfam IQ calmodulin-binding motif 119 135 IPR000048 GO:0005515(InterPro)
Mch5g0018 507 Pfam IQ calmodulin-binding motif 95 113 IPR000048 GO:0005515(InterPro)
Mch5g0018 507 Pfam Protein of unknown function (DUF4005) 357 458 IPR025064 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0175 Mch-Chr10:1049417 Mch5g0018 Mch-Chr5:147548 1.99E-24 dispersed
Mch10g1801 Mch-Chr10:17704495 Mch5g0018 Mch-Chr5:147548 1.58E-11 dispersed
Mch5g0018 Mch-Chr5:147548 Mch7g0083 Mch-Chr7:896691 4.35E-20 dispersed
Mch8g0835 Mch-Chr8:5928405 Mch5g0018 Mch-Chr5:147548 2.67E-06 dispersed
Mch5g0018 Mch-Chr5:147548 Mch4g2077 Mch-Chr4:22941834 1.17E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0018 - - - 0.0