Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0018 ATGGGGAAGAAGGGAGGAACCTCCTGGTTGACTGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGACGACGACGAGAAGAAAAGAGAGAAGCGGAGATGGATTTTCAGGCGATCCGAGACGGCGTCGAAGGCGAGCACGGAGCATGCATCTAATTCGGAGGCGGCGCTTGCTGTTGCGGTGGCAACTGCAGAAGCTGCAATGGCCACGGCGCAAGCGGCTGTGGAGGTCGCTCGCCTCACCACCAGGCCCAATTCCAACCATGCCAGAGGAGACCACTACGCTGCAATTGTGATTCAGACTGCGTTTAGAGGATACCTGGCAAGGAGGGCTCTGCGCGCGCTGAAGGGGCTGGTGAAGTTGCAGGCTCTGGTGAGGGGTCACAACGTGAGAAAGCAGGCGAAGATGACCCTCCGATGCATGCAGGCTCTGGTTCGAGTCCAAGCCCGTGTTCTTGATCAACGGATGAGACTCTCCCACGACGGCAGCAGAAAATCCACCTTCGCCTTCAGCGACACCAATACCGTCATTGGAGTTGGTTCGCGCTACCTTCATAACTTCTCTGACAGAAAATCTACTTCTCAGTCGAGGGAGGGAAGTAGCAGCATTGCGGACGACTGGGATGAATGTCCCCACACTATTGAAGAAGTGAAAGCTATGCTCCAACATAGAAAAGAGATTGCGATGAAGCGTGATAGGAATCTCTCCCACGCCTTCTCCCAACAGATATGGCGTAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGACGAGCTGGAAGAAAGACCCAAGTGGCTGGATCAATGGAATTCCAGGAAGCCATGGGAAAACAGGGGAAGAGCTTCAACGGATCAGAGAGATCCCATCAAAACGGTTGAAATTGACACTTTCCAGCCCTACTCTCACGCATCAATCAACTTCCGGAGAACGGCGACTCAGAATCAACAAAGATCAAATCCGCATTCCGGCAGCTCCCCACTCCACAGAACGCAACAGAGCATGCCCTGTTTCCACCCCTCCCCGGCCACGCCCTCCCCGTCCAAAACCAGGCCTCTCCAAGTCCGCTCTGCAAGTCCACGTTTCGTGAGAGACGACAAGAGCGAGAATACATCGCAAACACCAAGTTTAAGGTCAAACTACTACTACAGTGGCAATCTGCTTCAACAGAGTAAGATTGGAGGGAGTAGCAGTCATAATCAAGGCAATTGTTTGCCCAATTACATGGCCGCCACGGAGTCTGCAAAAGCCCGAGTACGGTCGCAGAGCGCCCCGAGGCAGAGGCCGTCGACTCCGGAGAGGGAGAGGGCAGTTGGGTCAGCAAAGAAGCGGCTGTCATTCCCAGTTCCGGACCCAACTGGGTATGGAGGAGCTTACGAGCGTAATTTGAGGAGTCCAAGCTTCAAGAGCGTGAGCGGGACATACTTGGGGGTGGAGCAGCAATCCAACTATTCATCCTGCTGCACAGACAGTCTCGGCGGAGAGATTTCCCCATCTTCAACCAGTGACCTAAGAAGGTGGCTAAGGTGA 1524 54.27 MGKKGGTSWLTAVKRAFRSPSKDDDEKKREKRRWIFRRSETASKASTEHASNSEAALAVAVATAEAAMATAQAAVEVARLTTRPNSNHARGDHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHDGSRKSTFAFSDTNTVIGVGSRYLHNFSDRKSTSQSREGSSSIADDWDECPHTIEEVKAMLQHRKEIAMKRDRNLSHAFSQQIWRRGRSPSMGSGDELEERPKWLDQWNSRKPWENRGRASTDQRDPIKTVEIDTFQPYSHASINFRRTATQNQQRSNPHSGSSPLHRTQQSMPCFHPSPATPSPSKTRPLQVRSASPRFVRDDKSENTSQTPSLRSNYYYSGNLLQQSKIGGSSSHNQGNCLPNYMAATESAKARVRSQSAPRQRPSTPERERAVGSAKKRLSFPVPDPTGYGGAYERNLRSPSFKSVSGTYLGVEQQSNYSSCCTDSLGGEISPSSTSDLRRWLR 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 147548 150875 - MC05g0016 Mch5g0018 687437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0018 507 MobiDBLite consensus disorder prediction 17 32 - -
Mch5g0018 507 SMART iq_5 91 113 IPR000048 GO:0005515(InterPro)
Mch5g0018 507 SMART iq_5 114 135 IPR000048 GO:0005515(InterPro)
Mch5g0018 507 MobiDBLite consensus disorder prediction 411 461 - -
Mch5g0018 507 Gene3D - 92 145 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 296 337 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 241 378 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 252 290 - -
Mch5g0018 507 ProSiteProfiles IQ motif profile. 92 120 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 485 507 - -
Mch5g0018 507 FunFam IQ-domain 11 91 142 - -
Mch5g0018 507 PANTHER IQ-DOMAIN 5-RELATED 9 438 - -
Mch5g0018 507 MobiDBLite consensus disorder prediction 1 32 - -
Mch5g0018 507 ProSiteProfiles IQ motif profile. 116 143 - -
Mch5g0018 507 Pfam IQ calmodulin-binding motif 119 135 IPR000048 GO:0005515(InterPro)
Mch5g0018 507 Pfam IQ calmodulin-binding motif 95 113 IPR000048 GO:0005515(InterPro)
Mch5g0018 507 Pfam Protein of unknown function (DUF4005) 357 458 IPR025064 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0018 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0175 Mch-Chr10:1049417 Mch5g0018 Mch-Chr5:147548 1.99E-24 dispersed
Mch10g1801 Mch-Chr10:17704495 Mch5g0018 Mch-Chr5:147548 1.58E-11 dispersed
Mch5g0018 Mch-Chr5:147548 Mch7g0083 Mch-Chr7:896691 4.35E-20 dispersed
Mch8g0835 Mch-Chr8:5928405 Mch5g0018 Mch-Chr5:147548 2.67E-06 dispersed
Mch5g0018 Mch-Chr5:147548 Mch4g2077 Mch-Chr4:22941834 1.17E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54