Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0027 ATGCCACATTTTCACCATTATTATTCTCTCTTCTTCTTTGCAGCCCTTCTTTCTGTTTCACTAATTACTCCTTCCTTTTCCTTCCATCCCAAATCCTTTAATGTGTCTATGTACCAGTCCCCCGATTCCGATTGGTCGCCTGCCGTCGCCACCTGGTACGGTAGCCGTGACGGTGCTGGAAGCGATGGAGGTGCATGCGGGTATGGGGAAGCCGTGGAGCAACCGCCCTTTTCGTCATTGATAGCAGCAGGAGGCCCTTCCCTGTACAAATCAGGGAAGGCATGTGGAGCTTGTTATCAGGTGAAGTGCTCGGAAAAAGCAGCTTGCTCAGGGAATCCGGTGACGGTGGTTATAACCGATAGTTGTCCCGGTGGGTCCTGTGCTTCTGACTCTGTCCATTTCGACCTCAGTGGCACCGCTTTTGGAGCTATGGCTGCAGCTGGGCGGGCTGATGAACTACGAAACCTAGGGGTTTTGCAGATTCAACATAAAAGGGTGGAATGCAACTATCCGGGCAGGTCGATAAACTTCGTGGTGGACTCGGGTTCGAACTCCAACTATTTTGCAGCTCTAATCGAATATGGAGATGGAGATGGAGATGTTGGTTCAGTGGAGCTGAAACAAGCTTTGGATTCCTACTCCTGGACTCCGATGCAGCAGTCATGGGGTGCGGTCTGGAAGCTGGACTCCGGCTCCGCCCTACAGGCTCCATTCTCCCTCAAGCTCACTTCCCTCGACTCCGGCAAGACTGTCGTCGCTAACAACGTAATTCCGGCTGGGTGGAAGCCCGGCCAGACTTACAGATCCCTCGTCAACTTCGATACTTAA 828 52.42 MPHFHHYYSLFFFAALLSVSLITPSFSFHPKSFNVSMYQSPDSDWSPAVATWYGSRDGAGSDGGACGYGEAVEQPPFSSLIAAGGPSLYKSGKACGACYQVKCSEKAACSGNPVTVVITDSCPGGSCASDSVHFDLSGTAFGAMAAAGRADELRNLGVLQIQHKRVECNYPGRSINFVVDSGSNSNYFAALIEYGDGDGDVGSVELKQALDSYSWTPMQQSWGAVWKLDSGSALQAPFSLKLTSLDSGKTVVANNVIPAGWKPGQTYRSLVNFDT 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 235024 236759 - MC05g0025 Mch5g0027 687446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0027 275 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576(InterPro)
Mch5g0027 275 PRINTS Expansin/Lol pI family signature 255 269 IPR007118 GO:0005576(InterPro)
Mch5g0027 275 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576(InterPro)
Mch5g0027 275 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576(InterPro)
Mch5g0027 275 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576(InterPro)
Mch5g0027 275 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576(InterPro)
Mch5g0027 275 Pfam Expansin C-terminal domain 175 258 IPR007117 -
Mch5g0027 275 PANTHER EXPANSIN-B3 18 273 - -
Mch5g0027 275 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch5g0027 275 PRINTS Major pollen allergen Lol pI signature 145 160 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch5g0027 275 PRINTS Major pollen allergen Lol pI signature 224 241 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch5g0027 275 PRINTS Major pollen allergen Lol pI signature 193 208 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch5g0027 275 PRINTS Major pollen allergen Lol pI signature 123 138 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch5g0027 275 PRINTS Major pollen allergen Lol pI signature 177 192 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Mch5g0027 275 CDD DPBB_EXPB_N 45 168 - -
Mch5g0027 275 Pfam Lytic transglycolase 82 155 IPR009009 -
Mch5g0027 275 SMART dpbb_1 81 163 IPR007112 -
Mch5g0027 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 186 269 IPR007117 -
Mch5g0027 275 Gene3D - 170 273 IPR036749 -
Mch5g0027 275 SUPERFAMILY PHL pollen allergen 173 269 IPR036749 -
Mch5g0027 275 SUPERFAMILY Barwin-like endoglucanases 44 193 IPR036908 -
Mch5g0027 275 Gene3D - 31 169 IPR036908 -
Mch5g0027 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 173 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0561 Mch-Chr2:3936759 Mch5g0027 Mch-Chr5:235024 7.43E-84 dispersed
Mch5g0027 Mch-Chr5:235024 Mch6g0242 Mch-Chr6:1592357 5.89E-30 dispersed
Mch5g0027 Mch-Chr5:235024 Mch4g0162 Mch-Chr4:1101870 1.79E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0027 - - - 0.0