Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0045 ATGGGTGGGACTGCGAGAGACGACGACTTGGCCCTCACTCTCACCTTAGGGTTTGGAGTTACCACTCAGCCCACTCACCTGCACAGGCCCCCCCACTCCATCCACAATCACCTACGCAAGGCGTCTTGGAACGAGCTTTTTCAATTTTCTGATCGAAACGCCGATACGAGGTCGTTTCTTCGGGGAATCGACGTGAATCGGCTGCCGACGACCGTGGATGGCGAGGAAGAAAACGGCGTTTCTTCTCCGAACAGTACGATTTCTAGCATCAGCGGGAAGAGGAGCGAGAGAGAAGCGGTCGGAGACGAGGCCGAGGCGGAGGCAGAGGCGGAAGCCGAGAGAGCCTCGTGCTCGCGGGGGAGTGACGATGAAGACGGCGGCGGGGGCGATGGCGACGCCTCGAGGAAGAAGCTGAGGCTATCGAAGGAGCAGTCGATGGTGCTCGAGGAGACCTTCAAAGAGCACAACACTCTGAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGAGACCTAGACAGGTGGAGGTGTGGTTTCAAAACAGGAGGGCAAGGACCAAGTTGAAGCAGACAGAAGTGGATTGCGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAGAACAGAAGGCTGCAAAAGGAGGTGCAAGAGCTGAGAGCACTCAAGCTCTCTCCACAGCTCTATATGCACATGAATCCGCCTACCACCCTCACCATGTGCCCTCAGTGTGAGCGTGTGGCTGTCGCCTCGTCCTCTTCGACCTCGGCCGCTCCGACCCGCCATCCACCGGCCACCTCACAGCGTCCCTCAGTAGCCATCAATCCGTGGGGGGTGTTGCCGATCCAACGTTGA 861 57.26 MGGTARDDDLALTLTLGFGVTTQPTHLHRPPHSIHNHLRKASWNELFQFSDRNADTRSFLRGIDVNRLPTTVDGEEENGVSSPNSTISSISGKRSEREAVGDEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVASSSSTSAAPTRHPPATSQRPSVAINPWGVLPIQR 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 354807 357580 + MC05g0042 Mch5g0045 687464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0045 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 264 IPR050762 -
Mch5g0045 286 Gene3D - 128 196 - -
Mch5g0045 286 FunFam Homeobox-leucine zipper protein 18 120 196 - -
Mch5g0045 286 MobiDBLite consensus disorder prediction 254 274 - -
Mch5g0045 286 SUPERFAMILY Homeodomain-like 121 192 IPR009057 -
Mch5g0045 286 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Mch5g0045 286 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch5g0045 286 Pfam HD-ZIP protein N terminus 6 98 IPR006712 GO:0005634(InterPro)
Mch5g0045 286 CDD homeodomain 135 192 IPR001356 GO:0003677(InterPro)
Mch5g0045 286 Pfam Homeodomain 135 189 IPR001356 GO:0003677(InterPro)
Mch5g0045 286 MobiDBLite consensus disorder prediction 70 136 - -
Mch5g0045 286 MobiDBLite consensus disorder prediction 110 136 - -
Mch5g0045 286 Coils Coil 197 227 - -
Mch5g0045 286 MobiDBLite consensus disorder prediction 75 93 - -
Mch5g0045 286 SMART HOX_1 133 195 IPR001356 GO:0003677(InterPro)
Mch5g0045 286 Pfam Homeobox associated leucine zipper 191 225 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0045 286 SMART halz 191 234 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0045 Mch-Chr5:354807 Mch9g0512 Mch-Chr9:3807043 1.59E-57 dispersed
Mch5g0045 Mch-Chr5:354807 Mch5g1450 Mch-Chr5:15582998 1.74E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43303 PF04618 HD-ZIP_N 2.20E-29 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0045 K09338 - csv:101222132 427.172