Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0066 CAAATTCAGTCCGGTGAGGTCATCATGAATGATCAAGAAGAACCCAAAAGGCCCCAATTCCCTCTCGATTCAAGCTCTTACAGAATCATCGACGAAATTGGGGTCGGCGTGAGCGCCGTCGTGTACAAAGCCATCTGCATTCCCATGAACTCCGCGGTGGTGGCTATCAAATCCATCGACCTCGACCGATCGCGGGCCGATTTTGACGATATCCGAAGGGAAGCCCAAATTCTGTCGCTTCTCTCTCACCCCAATATTCTCAACGCCCACTGTTCTTTCACCGTCGATCGTCGGCTCTGGGTCGTCATGCCGTTTATGTCCGCCGGGTCTCTGCAGTCCATCATTACGTCATCGTTTCCCGACGGTTTGCCGGAGCCCTGCATCGCCGTCGTACTCCGGGAAATTCTGAGCGCCCTGGCTTATCTCCACGACCAAGGCCACCTCCACCGCGACATTAAAGCCGGCAACATTCTGATGGACTCAAACGGGTCCGTTAAGCTCGCGGATTTCGGAGTTTCCACTTCGATTTTCGAGGCCAATGCGAAACAGGGGTTGTCGACTTCTTCGCTGTCGGCGTCGATGATGAAGCTAACGGACGTCGCCGGAACGCCGTACTGGATGGCGCCGGAGGTGATCCACTCGCATAATGGGTATAGTTTGAAGGCGGATATATGGTCATTTGGGATCACGGCGTTGGAATTGGCCGATGGACGCCCTCCCCTGTCTCATCTCCCGCCCTCCAAGTCTCTGCTTCTCAAAATCACGCGGCGCTTTCGATTCTCCGACTACGACAACGGCCGCAACAGCAAGAACAAATTCTCCAAAGGGTTTAAGGAGTTGGTCGCGTCTTGCCTCGATCAGGAGCCGTCCAAGAGGCCCTGCGCCCAGAAATTGCTGAAGCATTCGTTCTTCAGGAATTGCAAGGGCCCCGATGTTCTGGTCAGAACTGTGCTGCAGGGTTTGCCGAGTGTTGAAGAGAGGTTCAAATTGGGGAAACTGCAGCACTTGCCGTCGGTGAAAATCGACGGCGATGAGGGCGAGGAAGGGGAATTGGAGGAGGAGATTATCAAACAGAGGAGGATCAGCGGGTGGAATTTTAACGAGGACGGGCTGGAACTGGACCCGGTTTTCCCAGGTGAAAATTGCGAGGAGGATGAGTGTTCGATTGTAAAACAGGTTCGATTCGGCGGCGAATCGGTCATCGACGAGAAGGGTTCGGGGGATTCGAGCGAGTGCTGTTCGGGGCTGAGTTCGCCGAGCCAAACGGGGAACGACGGAGACCGGAGAAGCGGCGGCGGCGGTGGAGGGGAGGAAGAAATAGTGGACAAGGAGGCGATAGTGGGGGGATTGATGGCGTTGAAGAGGAGCTTAGACGAGCAGCGGCGGACGGTTGGGAATTTGATAGAGTTTTTGGAGGGGGAGAAAAATGGGGAGATGAACAGGGAGGAGCAAATGGTGAGGCTGATTGAGAAGATGACCCAGGAATTGGAGAATGAGAGGAACAGGAACTTCGAATTGGAGATGGAGTTGGAATTTCTAAGGCTTCAGATTTCTCCTGCATATAAT 1566 54.15 QIQSGEVIMNDQEEPKRPQFPLDSSSYRIIDEIGVGVSAVVYKAICIPMNSAVVAIKSIDLDRSRADFDDIRREAQILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILSALAYLHDQGHLHRDIKAGNILMDSNGSVKLADFGVSTSIFEANAKQGLSTSSLSASMMKLTDVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELADGRPPLSHLPPSKSLLLKITRRFRFSDYDNGRNSKNKFSKGFKELVASCLDQEPSKRPCAQKLLKHSFFRNCKGPDVLVRTVLQGLPSVEERFKLGKLQHLPSVKIDGDEGEEGELEEEIIKQRRISGWNFNEDGLELDPVFPGENCEEDECSIVKQVRFGGESVIDEKGSGDSSECCSGLSSPSQTGNDGDRRSGGGGGGEEEIVDKEAIVGGLMALKRSLDEQRRTVGNLIEFLEGEKNGEMNREEQMVRLIEKMTQELENERNRNFELEMELEFLRLQISPAYN 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 447074 448639 + MC05g0062 Mch5g0066 687485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0066 522 Gene3D Phosphorylase Kinase; domain 1 16 105 - -
Mch5g0066 522 ProSiteProfiles Protein kinase domain profile. 27 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0066 522 MobiDBLite consensus disorder prediction 400 440 - -
Mch5g0066 522 ProSitePatterns Protein kinases ATP-binding region signature. 33 57 IPR017441 GO:0005524(InterPro)
Mch5g0066 522 SMART serkin_6 27 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0066 522 MobiDBLite consensus disorder prediction 410 427 - -
Mch5g0066 522 SUPERFAMILY Protein kinase-like (PK-like) 25 320 IPR011009 -
Mch5g0066 522 FunFam Serine/threonine-protein kinase BLUS1 16 105 - -
Mch5g0066 522 Pfam Protein kinase domain 27 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0066 522 Gene3D Transferase(Phosphotransferase) domain 1 109 326 - -
Mch5g0066 522 MobiDBLite consensus disorder prediction 1 20 - -
Mch5g0066 522 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 19 378 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Mch5g0066 522 Coils Coil 479 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0066 K08835 - - csv:101215648 756.903
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2219 Mch-Chr4:23817061 Mch5g0066 Mch-Chr5:447074 5.91E-107 dispersed
Mch5g0066 Mch-Chr5:447074 Mch8g1508 Mch-Chr8:11515694 4.52E-105 dispersed
Mch5g0066 Mch-Chr5:447074 Mch7g0995 Mch-Chr7:14165140 1.43E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1051 . 1 686 MAP Kinase Kinase Kinase Kinase AT1G53165 62.2 6.8e-216 747.3
Mch11g1051 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 63.0 1.7e-222 769.2
Mch9g2066 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 51.3 4.3e-69 259.6
Mch9g2066 . 1 845 MAP Kinase Kinase Kinase Kinase AT1G69220 57.6 7.7e-243 837.0
Mch11g1051 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.0 6.2e-67 252.7
Mch4g2219 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.1 7.6e-252 866.7
Mch8g1508 . 24 630 MAP Kinase Kinase Kinase Kinase AT5G14720 55.1 7.2e-194 674.1
Mch10g1743 . 9 726 MAP Kinase Kinase Kinase Kinase AT4G24100 63.6 1.3e-241 832.8
Mch10g1743 . 11 727 MAP Kinase Kinase Kinase Kinase AT4G10730 63.9 6.0e-244 840.5
Mch8g1055 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 3.7e-133 472.2
Mch10g1743 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 59.0 9.8e-118 421.0
Mch8g1055 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 6.2e-214 740.7
Mch8g1508 . 30 377 MAP Kinase Kinase Kinase Kinase AT1G79640 67.8 1.5e-143 506.9
Mch4g2219 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 1.7e-104 376.7
Mch8g1508 . 24 350 MAP Kinase Kinase Kinase Kinase AT1G23700 56.1 1.3e-96 350.5
Mch8g1055 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 1.0e-88 324.3
Mch10g1743 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 6.3e-75 278.5
Mch5g0066 . 19 500 MAP Kinase Kinase Kinase Kinase AT4G14480 55.5 3.9e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77382 PF00069 Pkinase 1.10E-57 CL0016 Mch PK