Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g0070 | CTGGCGAATCCTTGGTGGACGACGCAGGTGGGGCTGGCCGGGGTGGATCACCCGGCGGTCAACTCACCGATCTTCAAACAAAGCGATGAAAACAGCGGCGGCAGCAGAGAGGATGATGAGGAGGACCGAGATCACGAGGCTAAAGAAGGCGCCGTCGAACCCGGAACCCGGAGACCCAGAGGCCGCCCACCCGGATCCAAAAACAAACCTAAACCTCCCATCTTCGTCACGCGCGACAGCCCCAACGCGCTCCGGAGCTACGTCCTCGAGGTCTCCGGCGGATCCGACGTGGCCGATTGCATTGCCCAATTCGCCCGCAAGCGCCAGCGTGGCGTCTGCGTCCTCAGTGCCACCGGCTTGGTCGCCAACGTCACCCTACGCCAGCCCGCCGCTCCTGCATCCGTAATGCCACTCCAAGGGAGGTTCGAGATTCTCTCTCTCACCGGCGCCTTCCTGCCCGGCCCTGCTCCGCCCGGATCCACCGGCCTCACCGTTTACTTATCCGGCGGTCAGGGCCAGGTCGTCGGTGGGACCGTCGTCGGCTCGCTCGTCGCTGCCGGGCCTATCATGGTAATTGCTGCAACTTTTGCTAATGCAACTTATGAGAGATTGCCTCTTGAAGATTCTGACGACCACGACGGCAGCGCCTCCGCCGCCCATGGCGCTGGACCGAGAAGCCCGCCGCCTGCAGGCCAGATGCAGACCGGGATGCCGCCTGAACCAACTTTACCGTTGTACAATCTACTGCCGGACATGATTCCCAACGGAGTTCATGAGCAGCTTGCCCACGACGGGTATGGTTAT | 804 | 62.44 | LANPWWTTQVGLAGVDHPAVNSPIFKQSDENSGGSREDDEEDRDHEAKEGAVEPGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVSGGSDVADCIAQFARKRQRGVCVLSATGLVANVTLRQPAAPASVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGTVVGSLVAAGPIMVIAATFANATYERLPLEDSDDHDGSASAAHGAGPRSPPPAGQMQTGMPPEPTLPLYNLLPDMIPNGVHEQLAHDGYGY | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 482774 | 483577 | - | MC05g0066 | Mch5g0070 | 687489 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g0070 | 268 | MobiDBLite | consensus disorder prediction | 38 | 56 | - | - | |
| Mch5g0070 | 268 | FunFam | AT-hook motif nuclear-localized protein | 84 | 211 | - | - | |
| Mch5g0070 | 268 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 82 | 209 | - | - | |
| Mch5g0070 | 268 | Gene3D | - | 84 | 212 | - | - | |
| Mch5g0070 | 268 | CDD | DUF296 | 85 | 168 | IPR005175 | - | |
| Mch5g0070 | 268 | PIRSF | ESCAROLA | 9 | 266 | IPR014476 | GO:0003680(InterPro) | |
| Mch5g0070 | 268 | ProSiteProfiles | PPC domain profile profile. | 81 | 221 | IPR005175 | - | |
| Mch5g0070 | 268 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 35 | 264 | IPR014476 | GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
| Mch5g0070 | 268 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 85 | 197 | IPR005175 | - | |
| Mch5g0070 | 268 | MobiDBLite | consensus disorder prediction | 16 | 78 | - | - | |
| Mch5g0070 | 268 | MobiDBLite | consensus disorder prediction | 206 | 244 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0706 | Mch-Chr11:4654981 | Mch5g0070 | Mch-Chr5:482774 | 1.77E-46 | dispersed | |
| Mch5g0070 | Mch-Chr5:482774 | Mch8g2974 | Mch-Chr8:32422099 | 2.11E-99 | dispersed | |
| Mch5g0070 | Mch-Chr5:482774 | Mch7g0992 | Mch-Chr7:14151062 | 3.50E-83 | wgd |
Pathway information