Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0087 ATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCTGTCAAAATCCGAGTTAAACCAGACAGAACGGGCGTCGAGACCCAGAATGTGAAAATGTCGATGAACCCCTTTTGCGAGATTGCGCTTGAGGAAGCCCTACGTATCAAGGAATCTGGCTTGGCCTCTGAGGTTGTGGCGGTGAGCATGGGTCCGACTCAGTGCGTGGACACGCTCAGGACGGGCCTCGCGATGGGTGCTGACAGGGGCATTCATGTGGAAGCCGTCGGACCCCTTTACCCTCTATCTGTTGCTAAGATTTTGAAGGCTCTTGTCGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAATCAAACGGGGCAGATGGTTGCAGGACTTCTGAACTGGCCTCAAGGAACTTTTGCTTCGAAGGTTGTGATAGATATGGAGAAGCAGGCAATTACGGTGGATAGAGAAGTGGACGATGGCCTCGAGACTCTGTGTTTGGACTTACCAGCTGTAATCACAACTGACTTGAGGCTGAACCAACCGAGGTATGCCACGCTCCCAAACATAATGAAAGCAAAATCGAAAGCCATAAAGAAGTTCACTCCACAGGAGTTAAACGTCGATGTGAAGCCGGATTTAGAGGTCGTCGAAGTTACAGAACCGCCAAAAAGAAAAGCGGGTATCATTTTAGCTACGGTCGACGACGCTCTGATCGATCCGATGGATCCATTAGAGGATCCGAGTTGTTGGGATTTTCTTAATTACACCTTGTTCGTCGCCGACGACAATATCAACCCTACGCTCGGTCCTTTGTGGGATAGTGGTGCGGAAACCGATGTTTCAGCCGGGCGCGTCGAATCTGAAGAAAACGAAATCTCGCGGAAGAGGGCACGAGATGGGTCGTGCACTAGATCAACTTCAAAAGCTTGCCGTGAGAAGTTGCGGAGAGAAAGGCTAAATGATAGGCAATTTCTAGACTTGAGCCTTGCTTTAGAACCTGGCAGACCTACCAGAACTAACAAGCCGGCCATACTCGACGATGCCATTAGAGTGTTAAATCAATTAAGGAGTGAAGCTGAAGATCTCAAACAAACTAATGAAAAATTACGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATCATTTTGAAGGAAGACAAAGAAAGGATCGAGCAACAGTTGAAATCTGTAGCCATTCCACCTCCAGGGCTCATTCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTCCCCGGTTATGGTTTGATCCCAATGTGGCCATATCTTCCTCCATCGGTACGTGATACATCTCAAGATCACGAGCTCAGACCTCCTGCCGCC 1389 48.31 MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIALEEALRIKESGLASEVVAVSMGPTQCVDTLRTGLAMGADRGIHVEAVGPLYPLSVAKILKALVEVEKPGLLLLGKQAIDDDCNQTGQMVAGLLNWPQGTFASKVVIDMEKQAITVDREVDDGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKAIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILATVDDALIDPMDPLEDPSCWDFLNYTLFVADDNINPTLGPLWDSGAETDVSAGRVESEENEISRKRARDGSCTRSTSKACREKLRRERLNDRQFLDLSLALEPGRPTRTNKPAILDDAIRVLNQLRSEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKERIEQQLKSVAIPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWPYLPPSVRDTSQDHELRPPAA 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 559774 566264 - MC05g0079 Mch5g0087 687506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0087 463 Gene3D - 307 392 IPR036638 GO:0046983(InterPro)
Mch5g0087 463 Coils Coil 349 404 - -
Mch5g0087 463 CDD bHLH_AtILR3_like 312 388 - -
Mch5g0087 463 Gene3D HUPs 1 243 IPR014729 -
Mch5g0087 463 FunFam Electron transfer flavoprotein subunit beta 1 246 - -
Mch5g0087 463 Pfam Electron transfer flavoprotein domain 26 207 IPR014730 -
Mch5g0087 463 SMART finulus 313 365 IPR011598 GO:0046983(InterPro)
Mch5g0087 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 359 IPR011598 GO:0046983(InterPro)
Mch5g0087 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 300 376 IPR036638 GO:0046983(InterPro)
Mch5g0087 463 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 240 IPR012255 GO:0005739(PANTHER)|GO:0009055(PANTHER)|GO:0009055(InterPro)|GO:0009063(PANTHER)|GO:0033539(PANTHER)
Mch5g0087 463 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 157 177 IPR000049 GO:0009055(InterPro)
Mch5g0087 463 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 240 - -
Mch5g0087 463 CDD ETF_beta 2 205 IPR033948 -
Mch5g0087 463 SMART ETF_2 23 213 IPR014730 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0619 Mch-Chr2:4246485 Mch5g0087 Mch-Chr5:559774 9.13E-29 dispersed
Mch3g1203 Mch-Chr3:15229738 Mch5g0087 Mch-Chr5:559774 1.83E-26 dispersed
Mch5g0087 Mch-Chr5:559774 Mch11g1152 Mch-Chr11:8087487 2.40E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0087 K03521 - csv:101210570 447.203