Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0091 | ATGGATTCCTCCGGCTTCTTCTCCCCGGCTTCCGATTTCTCATCGGAATCTTCCTTCGGTTCGCCGGAATCCTCCTTCATGAATTTGGACCACTATTTTCTCCCTTTCAACGAGAACGATTCGGAAGAAATGCTTCTCTACGAACTGATCTCGGAGGGGACTCAGGGGGGCGTTCGAGTGAAGGAAGAGGAAGTCGATTCCGTCGGCGAGGAGAGCCCCAAGAAGGAGAGATCTTACCGGGGCGTTCGCCGGCGGCCGTGGGGCAAATTTGCGGCGGAGATTAGAGATTCCACCCGACATGGAATCAGGGTCTGGTTGGGGACTTTCGACAGTGCTGAGGCAGCCGCTCTGGCCTACGATCAAGCCGCGTTTTCGATGAGGGGGGCCGCGGCAATTCTCAATTTTCCGGTGGACAGAGTTAGGGAGTCTCTGAAAGAAATGAACTGCAGCGGCGGCGGCGGCGGCGGCGGCGATGACGGCGGGTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCCATCAGAAGGAAGGCCATAAGCAAAAAGAGCAAAGAAAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGGGCAGAGTATTTGGAAGAACTTTTGGGCTCTTCTCAAAGTGGTAGCCCTTGTTCTTAC | 654 | 54.13 | MDSSGFFSPASDFSSESSFGSPESSFMNLDHYFLPFNENDSEEMLLYELISEGTQGGVRVKEEEVDSVGEESPKKERSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGGGGGDDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGSSQSGSPCSY | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 590752 | 591405 | + | MC05g0083 | Mch5g0091 | 687510 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0091 | 218 | CDD | AP2 | 79 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g0091 | 218 | FunFam | Ethylene-responsive transcription factor 2 | 77 | 138 | - | - | |
Mch5g0091 | 218 | Gene3D | AP2/ERF domain | 78 | 138 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g0091 | 218 | MobiDBLite | consensus disorder prediction | 58 | 80 | - | - | |
Mch5g0091 | 218 | SUPERFAMILY | DNA-binding domain | 79 | 137 | IPR016177 | GO:0003677(InterPro) | |
Mch5g0091 | 218 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Mch5g0091 | 218 | PANTHER | DNA-BINDING DOMAIN | 42 | 176 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Mch5g0091 | 218 | MobiDBLite | consensus disorder prediction | 58 | 78 | - | - | |
Mch5g0091 | 218 | SMART | rav1_2 | 78 | 142 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g0091 | 218 | PRINTS | Ethylene responsive element binding protein signature | 79 | 90 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g0091 | 218 | PRINTS | Ethylene responsive element binding protein signature | 102 | 118 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g0091 | 218 | ProSiteProfiles | AP2/ERF domain profile. | 78 | 136 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g0091 | 218 | Pfam | AP2 domain | 78 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0091 | Mch-Chr5:590752 | Mch7g0967 | Mch-Chr7:14046891 | 3.88E-74 | dispersed | |
Mch5g0090 | Mch-Chr5:581435 | Mch5g0091 | Mch-Chr5:590752 | 1.76E-21 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43310 | PF00847 | AP2 | 1.30E-14 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g0091 | K14516 | - | csv:101210326 | 303.908 |