Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0091 ATGGATTCCTCCGGCTTCTTCTCCCCGGCTTCCGATTTCTCATCGGAATCTTCCTTCGGTTCGCCGGAATCCTCCTTCATGAATTTGGACCACTATTTTCTCCCTTTCAACGAGAACGATTCGGAAGAAATGCTTCTCTACGAACTGATCTCGGAGGGGACTCAGGGGGGCGTTCGAGTGAAGGAAGAGGAAGTCGATTCCGTCGGCGAGGAGAGCCCCAAGAAGGAGAGATCTTACCGGGGCGTTCGCCGGCGGCCGTGGGGCAAATTTGCGGCGGAGATTAGAGATTCCACCCGACATGGAATCAGGGTCTGGTTGGGGACTTTCGACAGTGCTGAGGCAGCCGCTCTGGCCTACGATCAAGCCGCGTTTTCGATGAGGGGGGCCGCGGCAATTCTCAATTTTCCGGTGGACAGAGTTAGGGAGTCTCTGAAAGAAATGAACTGCAGCGGCGGCGGCGGCGGCGGCGGCGATGACGGCGGGTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCCATCAGAAGGAAGGCCATAAGCAAAAAGAGCAAAGAAAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGGGCAGAGTATTTGGAAGAACTTTTGGGCTCTTCTCAAAGTGGTAGCCCTTGTTCTTAC 654 54.13 MDSSGFFSPASDFSSESSFGSPESSFMNLDHYFLPFNENDSEEMLLYELISEGTQGGVRVKEEEVDSVGEESPKKERSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGGGGGDDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGSSQSGSPCSY 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 590752 591405 + MC05g0083 Mch5g0091 687510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0091 218 CDD AP2 79 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0091 218 FunFam Ethylene-responsive transcription factor 2 77 138 - -
Mch5g0091 218 Gene3D AP2/ERF domain 78 138 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0091 218 MobiDBLite consensus disorder prediction 58 80 - -
Mch5g0091 218 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677(InterPro)
Mch5g0091 218 MobiDBLite consensus disorder prediction 1 23 - -
Mch5g0091 218 PANTHER DNA-BINDING DOMAIN 42 176 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Mch5g0091 218 MobiDBLite consensus disorder prediction 58 78 - -
Mch5g0091 218 SMART rav1_2 78 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0091 218 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0091 218 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0091 218 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0091 218 Pfam AP2 domain 78 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0091 Mch-Chr5:590752 Mch7g0967 Mch-Chr7:14046891 3.88E-74 dispersed
Mch5g0090 Mch-Chr5:581435 Mch5g0091 Mch-Chr5:590752 1.76E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43310 PF00847 AP2 1.30E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0091 K14516 - csv:101210326 303.908