Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0116 ATGAGAACAAAGGCGAAGGCCTGGACTAAGAAGCAAATTTTTGGCCTCAAGAGTAAATTTAGGAAGATGATTAATTGTATCCGTTCGGGGGATCAGTTAAGAGTAGATGAAATGATGCATTCATCAGATTCTCTGGCAACTCGAGACTATTCAGCCAGTGGTTTTTCATCCCGAACTGGGGAGGTGGAACCAAAGGTGGACAATGGCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATCTGAATTATGAGGAAGCGCGAGCTTTACTTGGAAGGCTCGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTTTTTGAAGGAATAGATATTGCTGCTGTAATTTCAAGGATAAAAGCTTCCATTTCAACGAGATATGAACAAAATAGACGCCAATCACAAAGTGACGTTGTGCCTACTATGTCTATGCATGCCATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCAGCCAAATCATGCAAACTAATTTTAGACACTGTTGAATCTTCATTACCAGAAGGCTTACCAGAAAACTTCGGTGTAGATTGTAAATTGCAAGATACACTAACGAAGGCTGTTGAATTGCTTCCAGAACTGTGGAAATCTGCCGGATTTCCAGGAGAATCTATCGTGTCATATAGGCGTGCTCTTCTCTATCAATGGAATCTGGAAATGGAAACCAGAGCAAAAATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCTAATCTCCGTTCACAGATGGAAAGCTCATTCGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTCATGAGAAAATATATACTTGGATTGCTAGTATGGGACCCATCAATACTTGAACATCTCTCATTTGCGCTGTCTATTTCAGGGGAATTTGGAGCTCTAGCTCATGAGGTTGAACGATTGCCTCCAGGAATCATAGGAAGAAAAGAAAAGTACTGCACCCTGGCACTTTGTTACTATGGGGAAGGTAAAAACTTAGTTGCCTTGAATCTTTTGAAGAACTTCTTGAATAACATAGAGAACGTAGACTGCCTACTGGAATTGTTGTTGGCTTCAAAGCTCTGTGGGGAAAATTTGGTTTGTCTTGATGAGGGGGTGAGTTACACTTTGAGAGTGCTTCGGGAGCTGCAGTGTAAATGCATCCAGATGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTAAATCCAAATTAGTTGCTTCTGATTCCCGGAGAATTTTGAAGCAGTCTGAAGCACTCGAGGCACTACGAACTGCTGAGCAGCTGATGAGAGAAAGAGATCCATTCATTGTATATAATCTTTGCCTTGAATATGCTGAACAGAGGAAGTTGGATATTGCTCTATACTATGCAAAACAGCTAGTGAAACTCGAGGCTGGCTCTAGTCTGAAGTCTTACGTCCTCTTGGCCAGAATATTGTCAGCCCAGAAACGGTTTGTGGATGCAGAGACTGTACTGAGTGCTGCTCTTGAGCAGACTGGGAAATGGGAACAGGGGGAACTCTTGCGAACTAAAGCTAAGCTCCAGATTGCACAGGGTCGATTAAAGAGCGGTATAGAAACATATAGTCATCTTCTTGCTATAATTCAAGTCCGGACCAAAAGTAGTGGGACTGGAAAGATTCTTCCAAAGGATATGAGAAAATCTGACCGAAGTCTAGAAACAGAAACATGGCATGACTTGGCTAATATTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGTCTATCAAAATTGCAGGCAATCGATCCGTATTCTGCCTCTAAATGGCACTCCACAGGTTTACTGTATGAGTCAAAAGGTCTCCCACAAGATGCCCTGCAGGCATACAATAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGTTTGATATCCACTGCCTGTCTTCTCCAACGACTAGGTGGCAGTCAGTCATTTCCTGTAGTAAGAAGCTTGTTAACCGACGCCCTTCGACTTGACCGAGCAAACCCATCTGCGTGGCACAATCTCGGGCTGTTATATAAAGCTGATGTTGGGGCATCGGCGCTGGAGGCTGCTGAGTGCTTTGAGGCTGCAACTTTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2205 42.86 MRTKAKAWTKKQIFGLKSKFRKMINCIRSGDQLRVDEMMHSSDSLATRDYSASGFSSRTGEVEPKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESSLPEGLPENFGVDCKLQDTLTKAVELLPELWKSAGFPGESIVSYRRALLYQWNLEMETRAKIEKEFAIFLLYSGCDASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKYILGLLVWDPSILEHLSFALSISGEFGALAHEVERLPPGIIGRKEKYCTLALCYYGEGKNLVALNLLKNFLNNIENVDCLLELLLASKLCGENLVCLDEGVSYTLRVLRELQCKCIQMASVANCLLGVLLSAKSKLVASDSRRILKQSEALEALRTAEQLMRERDPFIVYNLCLEYAEQRKLDIALYYAKQLVKLEAGSSLKSYVLLARILSAQKRFVDAETVLSAALEQTGKWEQGELLRTKAKLQIAQGRLKSGIETYSHLLAIIQVRTKSSGTGKILPKDMRKSDRSLETETWHDLANIYTSLSQWRDAEICLSKLQAIDPYSASKWHSTGLLYESKGLPQDALQAYNKALDIDPGHVPSLISTACLLQRLGGSQSFPVVRSLLTDALRLDRANPSAWHNLGLLYKADVGASALEAAECFEAATLLEESAPVEPFR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 733447 741403 + MC05g0106 Mch5g0116 687535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0116 734 SMART tpr_5 154 187 IPR019734 GO:0005515(InterPro)
Mch5g0116 734 SMART tpr_5 588 621 IPR019734 GO:0005515(InterPro)
Mch5g0116 734 SMART tpr_5 496 529 IPR019734 GO:0005515(InterPro)
Mch5g0116 734 SMART tpr_5 622 655 IPR019734 GO:0005515(InterPro)
Mch5g0116 734 PANTHER PROTEIN NPG1 16 734 IPR043376 -
Mch5g0116 734 Pfam Tetratricopeptide repeat 629 654 IPR019734 GO:0005515(InterPro)
Mch5g0116 734 Gene3D Tetratricopeptide repeat domain 576 731 IPR011990 GO:0005515(InterPro)
Mch5g0116 734 SUPERFAMILY TPR-like 443 561 IPR011990 GO:0005515(InterPro)
Mch5g0116 734 Gene3D Tetratricopeptide repeat domain 65 575 IPR011990 GO:0005515(InterPro)
Mch5g0116 734 ProSiteProfiles TPR repeat profile. 622 655 IPR019734 GO:0005515(InterPro)
Mch5g0116 734 ProSiteProfiles Leucine-rich repeat profile. 355 376 IPR001611 GO:0005515(InterPro)
Mch5g0116 734 SUPERFAMILY TPR-like 533 704 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0920 Mch-Chr11:6281008 Mch5g0116 Mch-Chr5:733447 1.73E-180 dispersed
Mch5g0116 Mch-Chr5:733447 Mch8g0631 Mch-Chr8:4528230 1.14E-170 dispersed
Mch5g0116 Mch-Chr5:733447 Mch6g2836 Mch-Chr6:29647254 1.57E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0116 K21843 - csv:101206105 1280.0