Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0126 ATGAACTGCTCTATCTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAAGTCTGGATTACTCTTCGAGAAGCGTTTAATCGAGAGGCACATTTCAGACTATGGGAAATGCCCCGTTACAGGTGAACCCCTTTCCATCGATGACATCGTTCCAATTAAAACTGGGAAGATAGTCAAGCCCAGGCAAGCTGCTAGTATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGCTTTGGTGCTATCCAATTTTGCAGTAGAGCAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTACCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAGAAAGAACGGGACGAAGCTAGGTCATTACTTGCCCAGGCGGAGAGGCAGATGCCCTTGTCATCAACTTCAATTTCAACCAATGCTGCTGTCAATGTTAATGGGAAAAGAGTGAATGAGGACGAGGAATTGGGCCCTGATGGAAAGAAGATACGTCCTGGAATAACAGCCACTGTGATCTCTGAGCTCACAGATTGTAATGCTGCTCTTTCACAACAAAGGAAAAGGCGGCAGATACCCCCTACATTGGTTCCTGTTGAGGCTCTAGAAAGTTACACTCAAATATCTAGTCATCCACTTCATAAAACAAGCAAACCGGGCATTATATCTCTTGACATCCATCACGAGAAGGATGTCATTGCAACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGATCGATCATCTGGAGAGATATTATCTACTCTTAGTGGCCATTCAAAGAAGGTAACAAGCGTGAAATTTGTGGCTCGTGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTTCGTGTGTGGCAACAATCTGATGATGGGAACTATAATTGTAGGCACATTTTAAAGGATCACACTGCTGAGGTTCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGCTTTTATGAGCTTGCTTCAGGATTATGCCTAACCCAGGTTTCGGAGGCTTCAGGAACTGAGGGCTACACTTCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCGGAGGCACTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCAAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTCCGTACATTTGCACCTTATGATTCAGAAACACCAACAAACTCTGTGGAATTTGACCATAGTGGATCTTACCTTGCGATGGCCGGCTCAGATATAAGAGTGTACCAAGTTGCAAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACTTGTTTAAAATTTGGTCCGGATGCAAAATACTTGGCAGTCGGGTCCATGGACCGAAATCTTCGGATGTTCGGAGTGCCCGGGGAGGATGGCCCAATGGAAACATAA 1566 44.57 MNCSISGEIPEEPVVSKKSGLLFEKRLIERHISDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDALVLSNFAVEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISTNAAVNVNGKRVNEDEELGPDGKKIRPGITATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVLFDRSSGEILSTLSGHSKKVTSVKFVARDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVSEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAMAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRMFGVPGEDGPMET 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 829414 837373 + MC05g0116 Mch5g0126 687545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0126 521 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 511 IPR038959 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Mch5g0126 521 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch5g0126 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Mch5g0126 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Mch5g0126 521 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Mch5g0126 521 FunFam pre-mRNA-processing factor 19 196 512 - -
Mch5g0126 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Mch5g0126 521 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Mch5g0126 521 Coils Coil 113 133 - -
Mch5g0126 521 CDD RING-Ubox_PRP19 1 54 - -
Mch5g0126 521 SMART WD40_4 339 380 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 SMART WD40_4 252 291 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 SMART WD40_4 470 511 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 SMART WD40_4 297 336 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 SMART WD40_4 383 421 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 SMART WD40_4 207 249 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 SMART WD40_4 424 463 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 Pfam WD domain, G-beta repeat 355 380 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 Pfam WD domain, G-beta repeat 299 335 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 Pfam WD domain, G-beta repeat 473 510 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 SMART Ubox_2 1 66 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch5g0126 521 SUPERFAMILY WD40 repeat-like 220 510 IPR036322 GO:0005515(InterPro)
Mch5g0126 521 CDD WD40 223 510 - -
Mch5g0126 521 Gene3D - 199 512 IPR015943 GO:0005515(InterPro)
Mch5g0126 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515(InterPro)
Mch5g0126 521 SUPERFAMILY RING/U-box 1 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0126 K10599 - - csv:101204424 989.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1641 Mch-Chr3:18169392 Mch5g0126 Mch-Chr5:829414 1.50E-08 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
Mch8g2434 . 1 985 U-box Gene Family AT5G15400 76.4 0.0e+00 1507.7
Mch2g1291 . 196 838 U-box Gene Family AT2G23140 65.6 2.0e-121 433.3
Mch8g0100 . 1 769 U-box Gene Family AT1G24330 60.8 1.8e-249 859.0
Mch9g2354 . 1 582 U-box Gene Family AT1G24330 65.4 7.4e-211 730.7
Mch8g0100 . 1 768 U-box Gene Family AT1G67530 60.2 1.0e-247 853.2
Mch9g2354 . 1 582 U-box Gene Family AT1G67530 64.8 3.3e-206 715.3
Mch1g1805 . 1 362 U-box Gene Family AT4G21350 62.6 1.7e-120 429.5
Mch6g2246 . 4 273 U-box Gene Family AT3G07360 61.0 4.9e-71 265.0
Mch9g1301 . 250 447 U-box Gene Family AT1G71020 68.5 1.4e-74 277.3
Mch4g1391 . 702 901 U-box Gene Family AT1G71020 54.0 5.5e-55 212.2
Mch3g0294 . 258 427 U-box Gene Family AT1G71020 57.2 2.5e-47 186.8
Mch2g0908 . 257 427 U-box Gene Family AT1G71020 54.2 2.0e-44 177.2
Mch9g1301 . 17 651 U-box Gene Family AT1G23030 57.1 1.8e-111 400.2
Mch2g0908 . 94 637 U-box Gene Family AT2G28830 52.2 9.5e-102 367.9
Mch3g0294 . 91 638 U-box Gene Family AT2G28830 58.8 6.2e-101 365.2
Mch3g0294 . 1 643 U-box Gene Family AT3G46510 68.0 6.9e-165 577.8
Mch2g0908 . 9 637 U-box Gene Family AT3G46510 67.3 6.2e-158 554.7
Mch2g0908 . 13 630 U-box Gene Family AT3G54850 56.4 1.8e-109 393.7
Mch3g0294 . 8 631 U-box Gene Family AT3G54850 54.4 1.1e-100 364.4
Mch9g1807 . 1 279 U-box Gene Family AT3G54850 79.9 9.2e-50 195.3
Mch2g0424 . 173 724 U-box Gene Family AT5G42340 63.4 2.5e-114 409.8
Mch3g1054 . 1 712 U-box Gene Family AT1G29340 64.7 1.8e-251 865.5
Mch8g2291 . 27 442 U-box Gene Family AT5G37490 51.4 5.8e-112 401.4
Mch1g0580 . 13 414 U-box Gene Family AT3G52450 53.3 1.4e-118 423.3
Mch1g0580 . 13 414 U-box Gene Family AT2G35930 55.2 2.7e-119 425.6
Mch2g0219 . 7 406 U-box Gene Family AT2G35930 51.4 2.4e-115 412.5
Mch10g0491 . 1 415 U-box Gene Family AT3G19380 63.9 2.4e-147 518.8
Mch10g0491 . 1 415 U-box Gene Family AT1G49780 64.8 3.9e-153 538.1
Mch11g0376 . 5 455 U-box Gene Family AT3G49810 64.6 2.7e-157 552.0
Mch8g0620 . 6 446 U-box Gene Family AT3G49810 62.4 2.0e-152 535.8
Mch11g0376 . 5 455 U-box Gene Family AT5G65920 63.6 3.4e-152 535.0
Mch8g0620 . 6 446 U-box Gene Family AT5G65920 64.6 1.1e-150 530.0
Mch10g0145 . 208 705 U-box Gene Family AT3G49060 50.2 4.9e-138 488.8
Mch5g0393 . 1 880 U-box Gene Family AT2G45910 52.8 1.1e-231 800.0
Mch7g0670 . 1 300 U-box Gene Family AT2G45910 62.8 3.0e-109 393.3
Mch7g0671 . 1 142 U-box Gene Family AT2G45910 57.0 6.4e-43 172.9
Mch8g0371 . 227 515 U-box Gene Family AT2G19410 56.4 4.2e-92 336.3
Mch6g2652 . 25 811 U-box Gene Family AT4G25160 53.6 5.5e-228 787.7
Mch8g0371 . 214 520 U-box Gene Family AT4G25160 53.4 5.6e-87 319.3
Mch6g0178 . 1 288 U-box Gene Family AT5G65200 55.7 7.8e-53 205.3
Mch4g2245 . 12 551 U-box Gene Family AT5G40140 53.6 2.8e-95 346.3
Mch3g1473 . 24 485 U-box Gene Family AT5G40140 52.4 4.2e-59 226.1
Mch6g0178 . 1 283 U-box Gene Family AT5G62560 59.9 2.1e-50 197.2
Mch8g0100 . 1 772 U-box Gene Family AT1G27910 64.0 3.0e-273 937.9
Mch9g2354 . 1 582 U-box Gene Family AT1G27910 64.3 9.3e-206 713.8
Mch1g1286 . 1 592 U-box Gene Family AT5G67530 74.7 1.4e-262 902.1
Mch5g0327 . 3 162 U-box Gene Family AT5G67530 51.3 4.6e-43 172.9
Mch5g1593 . 12 150 U-box Gene Family AT5G67530 50.4 9.9e-38 155.2
Mch8g0371 . 217 513 U-box Gene Family AT5G61560 52.8 3.8e-85 313.2
Mch6g2652 . 26 813 U-box Gene Family AT5G61550 50.9 4.4e-225 778.1
Mch8g0371 . 227 514 U-box Gene Family AT5G61550 54.7 1.1e-85 315.1
Mch8g0371 . 227 514 U-box Gene Family AT5G51270 51.5 9.8e-81 298.5
Mch5g0126 . 1 516 U-box Gene Family AT1G04510 74.2 3.4e-223 771.2
Mch5g0126 . 1 485 U-box Gene Family AT2G33340 73.5 6.7e-210 726.9
Mch6g2247 . 10 278 U-box Gene Family AT3G07370 65.4 1.2e-99 359.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004919 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41