Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g0126 | ATGAACTGCTCTATCTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAAGTCTGGATTACTCTTCGAGAAGCGTTTAATCGAGAGGCACATTTCAGACTATGGGAAATGCCCCGTTACAGGTGAACCCCTTTCCATCGATGACATCGTTCCAATTAAAACTGGGAAGATAGTCAAGCCCAGGCAAGCTGCTAGTATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGCTTTGGTGCTATCCAATTTTGCAGTAGAGCAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTACCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAGAAAGAACGGGACGAAGCTAGGTCATTACTTGCCCAGGCGGAGAGGCAGATGCCCTTGTCATCAACTTCAATTTCAACCAATGCTGCTGTCAATGTTAATGGGAAAAGAGTGAATGAGGACGAGGAATTGGGCCCTGATGGAAAGAAGATACGTCCTGGAATAACAGCCACTGTGATCTCTGAGCTCACAGATTGTAATGCTGCTCTTTCACAACAAAGGAAAAGGCGGCAGATACCCCCTACATTGGTTCCTGTTGAGGCTCTAGAAAGTTACACTCAAATATCTAGTCATCCACTTCATAAAACAAGCAAACCGGGCATTATATCTCTTGACATCCATCACGAGAAGGATGTCATTGCAACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGATCGATCATCTGGAGAGATATTATCTACTCTTAGTGGCCATTCAAAGAAGGTAACAAGCGTGAAATTTGTGGCTCGTGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTTCGTGTGTGGCAACAATCTGATGATGGGAACTATAATTGTAGGCACATTTTAAAGGATCACACTGCTGAGGTTCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGCTTTTATGAGCTTGCTTCAGGATTATGCCTAACCCAGGTTTCGGAGGCTTCAGGAACTGAGGGCTACACTTCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCGGAGGCACTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCAAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTCCGTACATTTGCACCTTATGATTCAGAAACACCAACAAACTCTGTGGAATTTGACCATAGTGGATCTTACCTTGCGATGGCCGGCTCAGATATAAGAGTGTACCAAGTTGCAAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACTTGTTTAAAATTTGGTCCGGATGCAAAATACTTGGCAGTCGGGTCCATGGACCGAAATCTTCGGATGTTCGGAGTGCCCGGGGAGGATGGCCCAATGGAAACATAA | 1566 | 44.57 | MNCSISGEIPEEPVVSKKSGLLFEKRLIERHISDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDALVLSNFAVEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISTNAAVNVNGKRVNEDEELGPDGKKIRPGITATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVLFDRSSGEILSTLSGHSKKVTSVKFVARDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVSEASGTEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVEFDHSGSYLAMAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRMFGVPGEDGPMET | 521 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 829414 | 837373 | + | MC05g0116 | Mch5g0126 | 687545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g0126 | 521 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 511 | IPR038959 | GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER) | |
| Mch5g0126 | 521 | ProSiteProfiles | U-box domain profile. | 1 | 70 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Mch5g0126 | 521 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 259 | 291 | - | - | |
| Mch5g0126 | 521 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 259 | 291 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 348 | 389 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | IPR013083 | - | |
| Mch5g0126 | 521 | FunFam | Pre-mRNA-processing factor 19, putative | 1 | 58 | - | - | |
| Mch5g0126 | 521 | FunFam | pre-mRNA-processing factor 19 | 196 | 512 | - | - | |
| Mch5g0126 | 521 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 390 | 423 | - | - | |
| Mch5g0126 | 521 | Pfam | Prp19/Pso4-like | 64 | 129 | IPR013915 | - | |
| Mch5g0126 | 521 | Coils | Coil | 113 | 133 | - | - | |
| Mch5g0126 | 521 | CDD | RING-Ubox_PRP19 | 1 | 54 | - | - | |
| Mch5g0126 | 521 | SMART | WD40_4 | 339 | 380 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | SMART | WD40_4 | 252 | 291 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | SMART | WD40_4 | 470 | 511 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | SMART | WD40_4 | 297 | 336 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | SMART | WD40_4 | 383 | 421 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | SMART | WD40_4 | 207 | 249 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | SMART | WD40_4 | 424 | 463 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | Pfam | WD domain, G-beta repeat | 254 | 290 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | Pfam | WD domain, G-beta repeat | 385 | 421 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | Pfam | WD domain, G-beta repeat | 355 | 380 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | Pfam | WD domain, G-beta repeat | 299 | 335 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | Pfam | WD domain, G-beta repeat | 473 | 510 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | SMART | Ubox_2 | 1 | 66 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Mch5g0126 | 521 | SUPERFAMILY | WD40 repeat-like | 220 | 510 | IPR036322 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | CDD | WD40 | 223 | 510 | - | - | |
| Mch5g0126 | 521 | Gene3D | - | 199 | 512 | IPR015943 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 390 | 430 | IPR001680 | GO:0005515(InterPro) | |
| Mch5g0126 | 521 | SUPERFAMILY | RING/U-box | 1 | 53 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch3g1641 | Mch-Chr3:18169392 | Mch5g0126 | Mch-Chr5:829414 | 1.50E-08 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch5g0126 | K10599 | - | csv:101204424 | 989.178 |