Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0143 ATGGATTCAGGGATCTGCTCCGCTCAGCTCTCCCAGCTCTTCGGCCCCAACACCACCAACGCCACCGGCGCCGCCGCTTTCATCTGCGACCAGTTCGCCACCATCTCCAACAACTTCTCCGATACCAAAAATGCCCTCGACAACACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGAGCCAAGAACACCATGAACATTATGCTCACCAACGTCCTCGACGCCGCCGCCGGCGGCCTCTTCTACTACCTCTTCGGTTACGCCTTAGCCTTCGGTTCACCCTCCAACGGTTTCATCGGACGCCATAACTTCGGCCTCAAGTCCTTTCCGACTTCCACTGCCGATTATAGCGTGTTTCTGTACCAGTGGGCCTTTGCGATTGCCGCCGCTGGGATCACCAGCGGCTCAATCGCCGAGCGGACTCAGTTCGTCGCGTATTTGATTTACTCCTCTGTTTTGACCGGATTCGTTTACCCGGTGGTTTCTCATTGGTTCTGGTCCACCGATGGTTGGGCCAGTGCTCTGAAATCAGAAGGCGGATTGTTGTTCGGATCCGGAGTTATAGACTTTGCCGGCTCCGGCGTCGTCCATATGGTAGGGGGAATCGCCGGTCTGTGGGGCGCGTTGATCGAGGGGCCGAGAATCGGACGATTCGACCACTCCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCGTCGTTAGTCGTTCTCGGAACTTTTATGCTCTGGTTCGGATGGTACGGATTCAATCCAGGCTCGTTCAACAAGATTCTCGTCCCCTACGCAACCGGAAACTACTACGGCCAGTGGAGCGCCGTCGGGAGGACGGCGGTGACCACCACGCTCGCCGGCTGCACGGCGGCGCTAACCACGCTCTTCGGGAAAAGATTCCTATCGGGGCACTGGAACGTGACGGACGTTTGCAACGGACTCCTCGGCGGCTTCGCGGCCATAACCGCCGGATGCTCGGTCGTGGAGCCGTGGGCGGCGATCATCTGCGGCTTCGTCGCCGCCGTCGTCCTAATAAGCTGCAACCGCCTCGCGGAGAAGGTGAAATACGACGATCCACTAGAAGCGGCGCAACTCCACGGCGGCTGCGGCGCGTGGGGGGTGATATTCACGGCGCTATTCGCGACGGAGAAGTACGTTACAGAGGTGTACGGAAAATCCGGCCGTCCGTACGGTTTATTGATGGGCGGCGGGGGGAAGTTACTGGCGGCGCATTTGATACAGATAGTGGTGATTGTAGGGTGGGTGAGTGCGACGATGGGGCCATTGTTCTTTGCGCTGCACAAACTGAAGCTTCTGCGAATCTCTCCGGAAGATGAAATGGCTGGAATGGATATGACCCGCCATGGGGGATTTGCATATATTTATCATGATGAAGATGACGCGCAGAAAAGGGGGATTCAGATGAACAGAGTGGAGCCGAGATCTGCAACTCCGAATTCTGATTAT 1500 57.93 MDSGICSAQLSQLFGPNTTNATGAAAFICDQFATISNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYALAFGSPSNGFIGRHNFGLKSFPTSTADYSVFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSTDGWASALKSEGGLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFNKILVPYATGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAAVVLISCNRLAEKVKYDDPLEAAQLHGGCGAWGVIFTALFATEKYVTEVYGKSGRPYGLLMGGGGKLLAAHLIQIVVIVGWVSATMGPLFFALHKLKLLRISPEDEMAGMDMTRHGGFAYIYHDEDDAQKRGIQMNRVEPRSATPNSDY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 943775 945274 + MC05g0133 Mch5g0143 687562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0143 500 FunFam Ammonium transporter 28 486 - -
Mch5g0143 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch5g0143 500 Gene3D Ammonium transporter AmtB like domains 26 490 IPR029020 -
Mch5g0143 500 NCBIfam ammonium transporter 47 471 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch5g0143 500 PANTHER AMMONIUM TRANSPORTER 25 480 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Mch5g0143 500 SUPERFAMILY Ammonium transporter 44 452 - -
Mch5g0143 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0143 Mch-Chr5:943775 Mch7g0891 Mch-Chr7:13469856 6.55E-299 dispersed
Mch8g2525 Mch-Chr8:28233111 Mch5g0143 Mch-Chr5:943775 6.43E-256 transposed
Mch5g0143 Mch-Chr5:943775 Mch6g2311 Mch-Chr6:25075392 1.23E-253 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0143 K03320 - csv:101208366 913.679