Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0169 GTAGCAATGGCGGCGTCTGGAAAATGGATTCGATTGGTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGGACAATTGCCAGAGTTCCCAAAGAAATTTCTCAAACTCAGAATGGGGCAACTGAGATGTTGCAGAGCTCGAGCAACTCATCAATGGCAGTGAGGTTGGACGAGGTTGAGGCTCTCGATAACAAGCATGCCGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCTAGGAGGGAGCTCGGTTTCTTCTCATGTGGAACTGGCAATCCCATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTCGGCCGGAATGCCATCGGTGGTCGGGACGGCCGATTCTACGTCGTCACTGATTCCGGCGACGACAACCCGGTCAACCCAATGCCCGGCACCTTGCGCCATGCGGTCATCCAGGATGAACCTCTCTGGATTGTGTTCAAAAGGGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCCCGTGGGGCCAATGTTCACATTGCCAATGGCGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTTCATGGTCTGAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGAAGCTCGCCCAATCATGTTGGGTGGAGAACAATGGCTGATGGGGATGCCATTTCCATTTTTGGGTCGAGTCATATTTGGATCGATCACAATTCACTTTCTAACTGTGCTGATGGACTCGTTGATGCTGTGATGGGATCCACTGCAATTACCATCACCAGCAATTACTTCACCCACCACAATGAGGTAATGTTATTGGGGCACAGTGACTCTTATGTAAGAGACAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGCCTCATCCAAAGAATGCCAAGGTGCAGACACGGATACTTCCATGTGGTGAACAATGATTATACCCATTGGGAGATGTATGCCATCGGTGGAAGTGCAAACCCAACCATCAACAGCCAGGGTAACAGATATGCTGCCCCAACCAATCCTTTTGCAAAAGAGGTGACCAAGAGGGTTGAGACAGCTGAAACTGAGTGGAAAAGCTGGAATTGGAGATCAGAAGGAGACCTATTGTTGAATGGTGCGTTCTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTACGCCAGAGCCTCAAGCTTGGGAGCTAAATCCTCATCCATGGTTGCTTCCATAACATCCAGCGCCGGAGCGCTTTCCTGCCGCCGCGGCCATCCCTGCTAG 1344 50.22 VAMAASGKWIRLVLLVVFMLFVGTIARVPKEISQTQNGATEMLQSSSNSSMAVRLDEVEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDNPVNPMPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGANVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITSNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKSWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVASITSSAGALSCRRGHPC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1075846 1080675 - MC05g0155 Mch5g0169 687588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0169 447 FunFam Pectate lyase 98 440 - -
Mch5g0169 447 SUPERFAMILY Pectin lyase-like 75 442 IPR011050 -
Mch5g0169 447 Pfam Pectate lyase 184 362 IPR002022 -
Mch5g0169 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Mch5g0169 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Mch5g0169 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Mch5g0169 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Mch5g0169 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Mch5g0169 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Mch5g0169 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Mch5g0169 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Mch5g0169 447 PANTHER PECTATE LYASE 18-RELATED 22 444 IPR045032 GO:0030570(InterPro)
Mch5g0169 447 Gene3D - 98 440 IPR012334 -
Mch5g0169 447 SMART amb_all 173 370 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1395 Mch-Chr3:16452225 Mch5g0169 Mch-Chr5:1075846 2.10E-215 dispersed
Mch5g0169 Mch-Chr5:1075846 Mch8g0067 Mch-Chr8:378620 3.20E-209 dispersed
Mch5g0169 Mch-Chr5:1075846 Mch6g2290 Mch-Chr6:24906742 3.55E-257 wgd
Mch5g0169 Mch-Chr5:1075846 Mch7g0880 Mch-Chr7:13370018 9.58E-277 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0169 K01728 - csv:101218188 843.573