Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0169 | GTAGCAATGGCGGCGTCTGGAAAATGGATTCGATTGGTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGGACAATTGCCAGAGTTCCCAAAGAAATTTCTCAAACTCAGAATGGGGCAACTGAGATGTTGCAGAGCTCGAGCAACTCATCAATGGCAGTGAGGTTGGACGAGGTTGAGGCTCTCGATAACAAGCATGCCGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCTAGGAGGGAGCTCGGTTTCTTCTCATGTGGAACTGGCAATCCCATTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTCGGCCGGAATGCCATCGGTGGTCGGGACGGCCGATTCTACGTCGTCACTGATTCCGGCGACGACAACCCGGTCAACCCAATGCCCGGCACCTTGCGCCATGCGGTCATCCAGGATGAACCTCTCTGGATTGTGTTCAAAAGGGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAATAGTTTCAAGACAATTGATGCCCGTGGGGCCAATGTTCACATTGCCAATGGCGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTTCATGGTCTGAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGAAGCTCGCCCAATCATGTTGGGTGGAGAACAATGGCTGATGGGGATGCCATTTCCATTTTTGGGTCGAGTCATATTTGGATCGATCACAATTCACTTTCTAACTGTGCTGATGGACTCGTTGATGCTGTGATGGGATCCACTGCAATTACCATCACCAGCAATTACTTCACCCACCACAATGAGGTAATGTTATTGGGGCACAGTGACTCTTATGTAAGAGACAAACAAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGCCTCATCCAAAGAATGCCAAGGTGCAGACACGGATACTTCCATGTGGTGAACAATGATTATACCCATTGGGAGATGTATGCCATCGGTGGAAGTGCAAACCCAACCATCAACAGCCAGGGTAACAGATATGCTGCCCCAACCAATCCTTTTGCAAAAGAGGTGACCAAGAGGGTTGAGACAGCTGAAACTGAGTGGAAAAGCTGGAATTGGAGATCAGAAGGAGACCTATTGTTGAATGGTGCGTTCTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTACGCCAGAGCCTCAAGCTTGGGAGCTAAATCCTCATCCATGGTTGCTTCCATAACATCCAGCGCCGGAGCGCTTTCCTGCCGCCGCGGCCATCCCTGCTAG | 1344 | 50.22 | VAMAASGKWIRLVLLVVFMLFVGTIARVPKEISQTQNGATEMLQSSSNSSMAVRLDEVEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDNPVNPMPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGANVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITSNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKSWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVASITSSAGALSCRRGHPC | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1075846 | 1080675 | - | MC05g0155 | Mch5g0169 | 687588 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0169 | 447 | FunFam | Pectate lyase | 98 | 440 | - | - | |
Mch5g0169 | 447 | SUPERFAMILY | Pectin lyase-like | 75 | 442 | IPR011050 | - | |
Mch5g0169 | 447 | Pfam | Pectate lyase | 184 | 362 | IPR002022 | - | |
Mch5g0169 | 447 | PRINTS | Pollen allergen Amb family signature | 325 | 344 | IPR018082 | - | |
Mch5g0169 | 447 | PRINTS | Pollen allergen Amb family signature | 145 | 170 | IPR018082 | - | |
Mch5g0169 | 447 | PRINTS | Pollen allergen Amb family signature | 389 | 413 | IPR018082 | - | |
Mch5g0169 | 447 | PRINTS | Pollen allergen Amb family signature | 347 | 366 | IPR018082 | - | |
Mch5g0169 | 447 | PRINTS | Pollen allergen Amb family signature | 121 | 138 | IPR018082 | - | |
Mch5g0169 | 447 | PRINTS | Pollen allergen Amb family signature | 181 | 197 | IPR018082 | - | |
Mch5g0169 | 447 | PRINTS | Pollen allergen Amb family signature | 245 | 266 | IPR018082 | - | |
Mch5g0169 | 447 | PRINTS | Pollen allergen Amb family signature | 418 | 441 | IPR018082 | - | |
Mch5g0169 | 447 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 444 | IPR045032 | GO:0030570(InterPro) | |
Mch5g0169 | 447 | Gene3D | - | 98 | 440 | IPR012334 | - | |
Mch5g0169 | 447 | SMART | amb_all | 173 | 370 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch3g1395 | Mch-Chr3:16452225 | Mch5g0169 | Mch-Chr5:1075846 | 2.10E-215 | dispersed | |
Mch5g0169 | Mch-Chr5:1075846 | Mch8g0067 | Mch-Chr8:378620 | 3.20E-209 | dispersed | |
Mch5g0169 | Mch-Chr5:1075846 | Mch6g2290 | Mch-Chr6:24906742 | 3.55E-257 | wgd | |
Mch5g0169 | Mch-Chr5:1075846 | Mch7g0880 | Mch-Chr7:13370018 | 9.58E-277 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g0169 | K01728 | - | csv:101218188 | 843.573 |