Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0194 ATGGGTAGCGGGGAAAAGGTTTTCACCTTGAAGGAAGTCGCCGAGCACAACAACCACAGGGATTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAATTCTTAGAAGACCATCCTGGTGGTGATGACGTTTTGTTATCAGCTACAGGAAAAGATGCGACCGACGATTTTGAAGACGTGGGGCATAGTGACAATGCAAGAGAAATGATGGATCAATACTATGTCGGGGAGATTGATGGTTCAACAATTCCCAAGAAGGTCACATACACACCTCCAAAACAGCCTCACTACAATCAGGACAAGACATCTGAGTTCATCATCAAGCTCCTCCAGTTCCTCGTTCCGCTTGCCATTTTGGGATTGGCAGTTGCCATTCGGTTCTACACCAAACAAGCTTGA 405 46.17 MGSGEKVFTLKEVAEHNNHRDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDGSTIPKKVTYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1248593 1252270 - MC05g0180 Mch5g0194 687613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0194 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Mch5g0194 134 PANTHER CYTOCHROME B5 5 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Mch5g0194 134 FunFam Cytochrome b5 type B 3 85 - -
Mch5g0194 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Mch5g0194 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 91 IPR036400 -
Mch5g0194 134 Gene3D - 3 84 IPR036400 -
Mch5g0194 134 SMART Cyt_b5_2 8 81 IPR001199 -
Mch5g0194 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Mch5g0194 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Mch5g0194 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Mch5g0194 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Mch5g0194 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0194 Mch-Chr5:1248593 Mch6g1825 Mch-Chr6:20818771 3.02E-67 dispersed
Mch8g0144 Mch-Chr8:897967 Mch5g0194 Mch-Chr5:1248593 5.73E-36 transposed
Mch5g0194 Mch-Chr5:1248593 Mch6g2268 Mch-Chr6:24772305 2.20E-67 wgd
Mch5g0194 Mch-Chr5:1248593 Mch7g0872 Mch-Chr7:13249802 1.10E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0194 K23490 - csv:101214209 272.322