Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0195 | ATGGAGAAAGACGATAACTACTCAAGCGATCCCATGCCTCCAAGTTTCTCCAGCCACCACCACAGCGATCTCTACAACCAGCCAGACCCATCTCACCACCACCAAGACCAATTCATGAGGTCTCGCCTCCTCGAAACTTCCGGCGAAAACGGCGCCGGAGTCCTCAGCTACTTCCCGACAAATCCCCTGCCGCCGCCACCGCTGCAACCGATAACTTCTCTCGACAAGCTCAGCTTCGCCGAGGTGATGCAGTTCGCAGACTTTGGGCCGAAGCTGAGCCTGAACGCACAAACTAACAACAACAACTTCATCGAGGAACTAAACGAGGAGGCTGGCGGGATCGACCCGGTGTACTTCCTGAAGTTCCCGGTGCTGAACGAGAAATCGTCGGAGGAGGGACCGGGAGTGGGAGGAGGCGGCGGGGAACAGGAGGACGAGGAGAATTGCAGGAATAACAATGGGAGTAAGAATAAGAGGAAGAGGGGGAGGAGTGTGAAGACGAGTGAGGAAGTGGAGAGCCAACGGATGACTCATATTGCTGTAGAGAGGAATCGGAGGAAGCAAATGAATGAGCATCTTCGCGTCTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGAGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAGCTTCTCCAGTGCCTAGAGTCGCAGAAACGGCGTCGTCTCTTAGGAGAACCCCCATTGCAAGGCGGCGACCTGCCGCCGCAACCGCCATATCTGCCGCCGGGTGCCGAGAGCCAAATGTTCGAAACGACGACGACGGCGGCGGCGGCGGGGCTGCTCCGGGAGGAAACGGCGGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTCTAGGATTGGACGCGATGATCAAGATTCTGTCGAGGAGACGACCGGGACAGCTCATCAAAGCCATAGCCGCTCTCGAAGATCTGCAACTCAGTATTCTTCATACCAATATCACCACCATTGAACAAACTGTTCTCTATTCATTCAACGTCAAGATAGCAAGCGAGTCAAGATTCACAGCGGAAGATATAGCGACCTCAGTTCAGCAGATATTCAATTTTATTCATGCGAACACCGGCATGTGA | 1131 | 54.29 | MEKDDNYSSDPMPPSFSSHHHSDLYNQPDPSHHHQDQFMRSRLLETSGENGAGVLSYFPTNPLPPPPLQPITSLDKLSFAEVMQFADFGPKLSLNAQTNNNNFIEELNEEAGGIDPVYFLKFPVLNEKSSEEGPGVGGGGGEQEDEENCRNNNGSKNKRKRGRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLQGGDLPPQPPYLPPGAESQMFETTTTAAAAGLLREETAESKSCLADVEVKVLGLDAMIKILSRRRPGQLIKAIAALEDLQLSILHTNITTIEQTVLYSFNVKIASESRFTAEDIATSVQQIFNFIHANTGM | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1257813 | 1261658 | + | MC05g0181 | Mch5g0195 | 687614 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0195 | 376 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Mch5g0195 | 376 | SMART | finulus | 179 | 230 | IPR011598 | GO:0046983(InterPro) | |
Mch5g0195 | 376 | PANTHER | TRANSCRIPTION FACTOR FAMA | 109 | 369 | IPR044283 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER) | |
Mch5g0195 | 376 | FunFam | Basic helix-loop-helix transcription factor | 164 | 239 | - | - | |
Mch5g0195 | 376 | CDD | bHLH_AtFAMA_like | 176 | 244 | - | - | |
Mch5g0195 | 376 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 173 | 224 | IPR011598 | GO:0046983(InterPro) | |
Mch5g0195 | 376 | Gene3D | - | 164 | 239 | IPR036638 | GO:0046983(InterPro) | |
Mch5g0195 | 376 | MobiDBLite | consensus disorder prediction | 129 | 176 | - | - | |
Mch5g0195 | 376 | MobiDBLite | consensus disorder prediction | 241 | 261 | - | - | |
Mch5g0195 | 376 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
Mch5g0195 | 376 | Pfam | Helix-loop-helix DNA-binding domain | 174 | 225 | IPR011598 | GO:0046983(InterPro) | |
Mch5g0195 | 376 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 173 | 242 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0088 | Mch-Chr10:504618 | Mch5g0195 | Mch-Chr5:1257813 | 5.90E-29 | dispersed | |
Mch5g0195 | Mch-Chr5:1257813 | Mch8g0236 | Mch-Chr8:1549988 | 8.52E-45 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43317 | PF00010 | HLH | 7.70E-10 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g0195 | K26213 | - | csv:101214530 | 429.869 |