Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0195 ATGGAGAAAGACGATAACTACTCAAGCGATCCCATGCCTCCAAGTTTCTCCAGCCACCACCACAGCGATCTCTACAACCAGCCAGACCCATCTCACCACCACCAAGACCAATTCATGAGGTCTCGCCTCCTCGAAACTTCCGGCGAAAACGGCGCCGGAGTCCTCAGCTACTTCCCGACAAATCCCCTGCCGCCGCCACCGCTGCAACCGATAACTTCTCTCGACAAGCTCAGCTTCGCCGAGGTGATGCAGTTCGCAGACTTTGGGCCGAAGCTGAGCCTGAACGCACAAACTAACAACAACAACTTCATCGAGGAACTAAACGAGGAGGCTGGCGGGATCGACCCGGTGTACTTCCTGAAGTTCCCGGTGCTGAACGAGAAATCGTCGGAGGAGGGACCGGGAGTGGGAGGAGGCGGCGGGGAACAGGAGGACGAGGAGAATTGCAGGAATAACAATGGGAGTAAGAATAAGAGGAAGAGGGGGAGGAGTGTGAAGACGAGTGAGGAAGTGGAGAGCCAACGGATGACTCATATTGCTGTAGAGAGGAATCGGAGGAAGCAAATGAATGAGCATCTTCGCGTCTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGAGGAGCAATCGAGTTCGTGAGGGAGCTGGAGCAGCTTCTCCAGTGCCTAGAGTCGCAGAAACGGCGTCGTCTCTTAGGAGAACCCCCATTGCAAGGCGGCGACCTGCCGCCGCAACCGCCATATCTGCCGCCGGGTGCCGAGAGCCAAATGTTCGAAACGACGACGACGGCGGCGGCGGCGGGGCTGCTCCGGGAGGAAACGGCGGAGAGCAAATCGTGCCTTGCTGACGTGGAAGTGAAGGTTCTAGGATTGGACGCGATGATCAAGATTCTGTCGAGGAGACGACCGGGACAGCTCATCAAAGCCATAGCCGCTCTCGAAGATCTGCAACTCAGTATTCTTCATACCAATATCACCACCATTGAACAAACTGTTCTCTATTCATTCAACGTCAAGATAGCAAGCGAGTCAAGATTCACAGCGGAAGATATAGCGACCTCAGTTCAGCAGATATTCAATTTTATTCATGCGAACACCGGCATGTGA 1131 54.29 MEKDDNYSSDPMPPSFSSHHHSDLYNQPDPSHHHQDQFMRSRLLETSGENGAGVLSYFPTNPLPPPPLQPITSLDKLSFAEVMQFADFGPKLSLNAQTNNNNFIEELNEEAGGIDPVYFLKFPVLNEKSSEEGPGVGGGGGEQEDEENCRNNNGSKNKRKRGRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLQGGDLPPQPPYLPPGAESQMFETTTTAAAAGLLREETAESKSCLADVEVKVLGLDAMIKILSRRRPGQLIKAIAALEDLQLSILHTNITTIEQTVLYSFNVKIASESRFTAEDIATSVQQIFNFIHANTGM 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1257813 1261658 + MC05g0181 Mch5g0195 687614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0195 376 MobiDBLite consensus disorder prediction 1 37 - -
Mch5g0195 376 SMART finulus 179 230 IPR011598 GO:0046983(InterPro)
Mch5g0195 376 PANTHER TRANSCRIPTION FACTOR FAMA 109 369 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Mch5g0195 376 FunFam Basic helix-loop-helix transcription factor 164 239 - -
Mch5g0195 376 CDD bHLH_AtFAMA_like 176 244 - -
Mch5g0195 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 224 IPR011598 GO:0046983(InterPro)
Mch5g0195 376 Gene3D - 164 239 IPR036638 GO:0046983(InterPro)
Mch5g0195 376 MobiDBLite consensus disorder prediction 129 176 - -
Mch5g0195 376 MobiDBLite consensus disorder prediction 241 261 - -
Mch5g0195 376 MobiDBLite consensus disorder prediction 10 24 - -
Mch5g0195 376 Pfam Helix-loop-helix DNA-binding domain 174 225 IPR011598 GO:0046983(InterPro)
Mch5g0195 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 242 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0088 Mch-Chr10:504618 Mch5g0195 Mch-Chr5:1257813 5.90E-29 dispersed
Mch5g0195 Mch-Chr5:1257813 Mch8g0236 Mch-Chr8:1549988 8.52E-45 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43317 PF00010 HLH 7.70E-10 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0195 K26213 - csv:101214530 429.869