Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0198 ATGCTCTCTGGGTTTTCGCAGGAAGCGGCCGGAATGTACTCGGCCATTCCGGCGCTCCCGATCGACGGCGGCGTCGGCGTCGGCGTTGGCCACGGCAAGTTTCAGGGTTCTCTCGACGGAACGAATCTCCCCGGCGACGCTTGCCTGGTTCTCACGTCGGATCCGAAGCCCCGCCTCCGCTGGACGGCGGAGCTCCACGAGCGATTCGTCGACGCCGTCACTCAACTCGGCGGCCCCGACAAGGCAACCCCAAAGACTATTATGAGAACAATGGGAGTAAAAGGCCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTTGGAAAGCAATCGTTCAAGGAATCGACCGAGAACTCTAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACGAGTTCCTCTTCGTCCCCATCGTCCAGAATAATGACACAGGATCTGAATGATGGTTTCCAAGTCACGGAGGCTTTACGGGTGCAAATGGAGGTTCAAAGAAGGCTACACGAACAACTGGAGGTGCAGCGTCATCTCCAACTTCGCATCGAAGCACAGGGAAAATACCTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTGAGCGATCAGGCTGCCGCGTCAGCCGGGCTCGAAGCTGCCAGGGAAGAGCTCTCAGATCTGGCTATCAAAGTCTCCAATGACACTAAAGACATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAACCGAAAAGCTCCAACTGTTATGGCTCGAATCGGCGACTGCTCCATGGATAGCTGCCTGACATCGGCTGGAAGCCCGGTTTCCCCAATCAGAGTAGGTACAACTGCCACCGCAATGAAGAGACCAAGACCCGTATTTGGAGATTCAATGGCTCTCGAGGGCAATGCGCGTCATGAAGTCGAGTGGATGATGAGTAATATTGGATGA 960 53.65 MLSGFSQEAAGMYSAIPALPIDGGVGVGVGHGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSDLAIKVSNDTKDMAPLETQKVLPFSELAAALENRKAPTVMARIGDCSMDSCLTSAGSPVSPIRVGTTATAMKRPRPVFGDSMALEGNARHEVEWMMSNIG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1289376 1293435 + MC05g0184 Mch5g0198 687617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0198 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 113 IPR017930 -
Mch5g0198 319 MobiDBLite consensus disorder prediction 120 145 - -
Mch5g0198 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 39 280 IPR046955 GO:0003700(InterPro)
Mch5g0198 319 Pfam Myb-like DNA-binding domain 58 109 IPR001005 -
Mch5g0198 319 Pfam MYB-CC type transfactor, LHEQLE motif 154 199 IPR025756 -
Mch5g0198 319 NCBIfam myb-like DNA-binding domain, SHAQKYF class 56 111 IPR006447 GO:0003677(InterPro)
Mch5g0198 319 FunFam Myb family transcription factor 55 113 - -
Mch5g0198 319 MobiDBLite consensus disorder prediction 119 145 - -
Mch5g0198 319 Gene3D - 55 114 - -
Mch5g0198 319 SUPERFAMILY Homeodomain-like 56 113 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1665 Mch-Chr1:17503106 Mch5g0198 Mch-Chr5:1289376 5.57E-50 dispersed
Mch4g0013 Mch-Chr4:113849 Mch5g0198 Mch-Chr5:1289376 5.48E-51 dispersed
Mch5g0198 Mch-Chr5:1289376 Mch5g1160 Mch-Chr5:10518497 2.00E-41 dispersed
Mch5g0198 Mch-Chr5:1289376 Mch1g1933 Mch-Chr1:19178333 1.34E-14 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43318 PF00249 Myb_DNA-binding 1.90E-07 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0198 - - - 0.0