Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0218 CACACACAATTTTTAGAAATCAAAGTCTCCCAAAGTCTCCAACCAACAACCCCTCTCGTTGAAAATTTACGGTCATATTTTTTTTCATCTTTTTATTTTATATTTGTTCGTGAAAAAAAAAACGAGAGAAGAAAAAAGAGAACGGCGAAGAAGCGGGTGGAGCAAAGTCAATCTCTGGAAGAACAAGAACACGAACCTTACCTTACCTGTCGATTTCACACCAATTCTTACCACCACCATATCCTCCGCGTAATTTTTCATCTCCAAATCTCTCTCTCCCGCTTCCACCGATTGTTTCAGATCCTGATCCTGGTCCGCCGTCGTTCAAGGATAATGGAGGCAGCTGCTGGAGGCGGAGGCGCCGGCGGTGCTGGTCCGGCGCCGTTTCTCATAAAGACATACGACATGGTGGACGACTCGGCCACGGACTCGATCGTATCCTGGACCTCTTCGAACAAGAGCTTCGTGGTCTGGAATCCTCCTGAATTCGCTCGCCTTCTTCTTCCTACGTATTTCAAGCATAATAACTTCTCCAGCTTCATTCGGCAGCTTAATACCTATGGGTTTCGGAAGATTGATTCTGAGAGATGGGAATTTGCTAACGAAGACTTCATAAAGGATCAAAAGCATCTACTAAAGAACATCCATCGTCGGAAACCAATTCATAGTCACAGTAATCCTCAAGGATCTCTTGTAGATCCAGAAAGAGCTGCTTTTGAAGATGAAATAGAGAGGCTATCACGTGAAAAGGCTACACTTGAAGCTAATATCTCAAGGTTCAAACAGCAAAAATCCACTGCTAAACATCAGGTGCGAGATCTAACGGTGAAGGTGGAAAGCATGGAAAAAAGGCAGAAGAGTTTATTGGCATTTCTAGAAAAGGCTGTTCAAAACCCATCTTTTGTTGAACATCTTGCTCGAAGAGTCGAGTCTATGGACTTCACAGCATTTAACAAAAAGAGACGACTGCCTCAAGCTGATCATCCACAGCCACTCATTGAAAATAGTTTTTTGGACAACCATAGCAGTTCCAGGTCTGAGTCTGGCAATATTTTTCATCAGGATTTCTCACATAAGCTGAGGTTAGAATCATCAACCGTCTCGGATGTTAACTTAATTTCATGTAGCACCCAGAGTTCAAACGAAGAAGGGGGAAGTTCACAAAGAAATATGTCAAAAATAGATACTAGAGGCGTCCAAGAGAATCTTCATTTTGCAACCGAAACATTAGATCTCTCAGACACTGGGACATCATTTATATTGAAGAGGGATTCATCTTTGTCAGGGAAATCGCCTAACGACGAGAGCCCACGTCTGTCGCAACCAAGTGCTAGTTCCAAAGAAGATGGAGAAAGTCACATTTCCTGTCATTTAAATCTCACTCTTGCATCTTCTTCCCTGCGCGTCAACGACACTGCTTGTTCAGTTAGAATGCCACAACTGGGTCAGACTGCTCGAAAGTCTCCAGATTCAAATGGAAAAGAAGCAGACATGAGACTCTTCACTAAGAACATAAATCTTGATGAAAGAACAACGCCATTTTGTCCCCAAGAGAACCTAAGTAACCATCACGGGCCCTCAGCCGCAGCCGCAGCCGCTCCTGTTAGAGCCAATGATTTCTTCTGGGAACAGTTTCTTACTGAAAGACCAGGTTGTCCTGAAAGTGAAGAGGCAAGTTCTAATTACAGGGCAACTTTATACAAGGAGCCTGATGATGGGAGATCGGGCCTGTCTCTTTAA 1740 43.68 HTQFLEIKVSQSLQPTTPLVENLRSYFFSSFYFIFVREKKNERRKKRTAKKRVEQSQSLEEQEHEPYLTCRFHTNSYHHHILRVIFHLQISLSRFHRLFQILILVRRRSRIMEAAAGGGGAGGAGPAPFLIKTYDMVDDSATDSIVSWTSSNKSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDSERWEFANEDFIKDQKHLLKNIHRRKPIHSHSNPQGSLVDPERAAFEDEIERLSREKATLEANISRFKQQKSTAKHQVRDLTVKVESMEKRQKSLLAFLEKAVQNPSFVEHLARRVESMDFTAFNKKRRLPQADHPQPLIENSFLDNHSSSRSESGNIFHQDFSHKLRLESSTVSDVNLISCSTQSSNEEGGSSQRNMSKIDTRGVQENLHFATETLDLSDTGTSFILKRDSSLSGKSPNDESPRLSQPSASSKEDGESHISCHLNLTLASSSLRVNDTACSVRMPQLGQTARKSPDSNGKEADMRLFTKNINLDERTTPFCPQENLSNHHGPSAAAAAAPVRANDFFWEQFLTERPGCPESEEASSNYRATLYKEPDDGRSGLSL 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1451641 1454507 + MC05g0203 Mch5g0218 687637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0218 579 MobiDBLite consensus disorder prediction 335 350 - -
Mch5g0218 579 Coils Coil 236 284 - -
Mch5g0218 579 MobiDBLite consensus disorder prediction 330 350 - -
Mch5g0218 579 Coils Coil 36 59 - -
Mch5g0218 579 ProSitePatterns HSF-type DNA-binding domain signature. 168 192 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0218 579 Pfam HSF-type DNA-binding 129 218 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0218 579 Gene3D - 126 204 IPR036388 -
Mch5g0218 579 MobiDBLite consensus disorder prediction 551 579 - -
Mch5g0218 579 SMART hsfneu3 125 218 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0218 579 SUPERFAMILY Winged helix DNA-binding domain 125 218 IPR036390 -
Mch5g0218 579 MobiDBLite consensus disorder prediction 423 449 - -
Mch5g0218 579 FunFam Heat shock transcription factor 1 122 219 - -
Mch5g0218 579 MobiDBLite consensus disorder prediction 423 452 - -
Mch5g0218 579 PRINTS Heat shock factor (HSF) domain signature 129 152 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0218 579 PRINTS Heat shock factor (HSF) domain signature 180 192 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0218 579 PRINTS Heat shock factor (HSF) domain signature 167 179 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0218 579 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 110 508 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Mch5g0218 579 Gene3D - 205 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0218 K09419 - - csv:101203054 770.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1053 Mch-Chr3:14116413 Mch5g0218 Mch-Chr5:1451641 9.77E-50 dispersed
Mch5g0218 Mch-Chr5:1451641 Mch5g1657 Mch-Chr5:17390744 4.57E-48 dispersed
Mch5g0218 Mch-Chr5:1451641 Mch1g1963 Mch-Chr1:19342758 1.39E-52 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009917 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43320 PF00447 HSF_DNA-bind 1.10E-30 CL0123 Mch TF