Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0260 ATGCCTCCAAGGAAGAAGCCTAATTCTTCTTCTAAGAAGCTCAATTCAAATCAGCAATCGCAGCCTTCCAAGTTCGGCATCCAACACTTTTTCGAGCGCCACTCTCAGAATGTTGCGCAGTCACAAAAGCTCACTTCACGATCTTCCGATTCGAAAACTGATGTTTCTAACTCTTTGAAACGTGGAGCTGATGATCTGAATGCGGCAGCGGTTGATTCAAAGGGCGCCGCTGCGGCTACGGCAGCTCAAAAGTCAGAGTTGCGGGTGCTCCCAGTGAATGATGCAGTTTTAGCTTCTGAAAACCCTAAGGTACCGCAGGGGAATGATGCTAGCTGTTCATCTCTGAATACGACGCCTGAGAATTTGGTTACGGCTGTTCGGAATGATGGTGATGATCATCCTAATGAGGTGTCTCCACAATTTTCCAAGTCCGTGTCCCTGAAGCGCTTCAAGTTCTCTCCGGGGATGCTGATAAAGCAAAGTCAGGATGATGGGAGTGATGAGATCACATGGAAGATATCTCCAGTAAACGTAAGGCTTCAGGCTGCTTCAAAGCAAACGCCAGAAACTATAAGAGTTCTGGCGAATTCCTCGAGGCTCAGTTCTTTGAGAATTCGACAGTGCTCACGAAATAAGGCTTCTTCAGTAGAACCCGAGAATTTGGAGCAGTTAAGTTCACCAGAGTTGAGACCTTGTCAAAGATCAGTGGTTTCGTTAAATAAGACTGGATTGAAAAGGTTAAATCCTCAGCATGATATGGAACCTAATGGAGTTGCGATTGATAGTTTGGGTGGCTCTGGAGTAAGTAACAGTCAGAGTCCATTCCGGACGCCCCCATCTTTGTCATACTGCGATAAGATTGCCAATGGCGTTGAATGTAATGAAGCACAGAATCACCCTACTTTAAGACCGCACAAAAAGGCATTGCTTGATCTTTTAGATCAAGTAGAAGATGTCATTGCTGTTGATACTGTGGCTTCCATCGACTTGGGGGTGCATTCATCTAAATTAAAAGGTAGAAATGGTAACAAGTTGACTACTAGAGTTGATTCAGCAACAACGCAAGTTACTAAAAGTCTTCCAGACACAGTGATAAAGAGACCCCCTTCTGATTTTCTTGTCTTGGAGGTAACTGAGAAGTGTGAGCTGGATGCTACATCTGGTGGTAGACGCTCATATAAGGTTCTTCGTCTGCTAAATGAGCAGAGTGGAGAAGAACGGGCTGTATATCTTTGGGAAGACTGGTTTGACAGTATTATTGCACCTGGAGATGCTGTGAATGTTATTGGTGAATTTGATGACGAAGGAAGGTGTCACGTTGACCATGACAATAATTATGTTATCCTACACCCAGATATACTTGTCTCTGGAACTCGGGTTGCTGGTCATTTGACTTGTCCGAGAAGGAGTGTTCTTGATGAGAGGCTGAAATGTAACGAACAGTCAATTTCAGCATTACTTGGTACTTTGCTGCACCAGATTTTTCAGGCTGGTCTTATGGAAGAAGCACCAACTGTCGCCTTTTTGGAAGAGGTTTCAAGAACGGTGCTCCAGAAAAGTATGGAAAACGTGTATGCATGTGGAGCAAATGAAAAGGATATACGCAAAACCATGAATGAGGCGATTCCAAAAATGTTGCATTGGATCACCCTCTTCAAATGTTCCATGGGTTCTAAAGCACCAACTATTGAGTTTAGATCTAATGATGGTCCCAAGAAAGTTAGTATATCGGAGGTAATTGATATTGAGGAGATGGCATGGGCTCCCAAATATGGCTTGAAAGGAATTATTGATGCTTCTGTCAGGGTAAATGTAACGTCAAATGATAATAAGCGTGCTGAGAATGTCATGCCTTTAGAGTTTAAAACTGGAAAAGTGCCAGCTGGCCAGGCAATCTCCATGGAACATTCTGCCCAAGTGATCTTGTACACACTGCTTATGTCCGAGAGGTACCAGAAACATGTTGGTCGTGGTCTCCTTTATTATCTCCAGTCGGATCAGACACAGGGAATCCGGGTTCAAAGATCTGACCTGGTGGGGTTAATCATGCGTCGGAATGAGCTTGCAAATAACATCCTCAAGGCATCAACTGCACAATTACTTCCCCCTATGTTACAGATTCAAAGTGTGTGCAAAGGATGTCGCCATCTTGATGTTTGTACCATTTATCATAAGATGCAAAATGGAAGCAAAGATAGTAGTGGGCTTGGAGTTCTATTTGACTCCCACACGGATCATTTGAAAGCTTCTCATGGTACTTTCTTTCAGCATTGGGAAAGATTGATTGATTTAGAAGCCAAAGAAACGGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGTGGGAAAAAATCAAATGTCTACCTGTATTTCTTCTCTTGTTCTTACCACGTTGGATGAGCGACCACATTGTACTTTTGAAAAGGACAACCGGATCATCTATCGTTTTGTCCGTCAAGATTTGTCTTCACCGTGTTTGAAAGATTCAAATGGTGATAGTTCAAACACTGATACTTCAATAAATGAAATGGATAGTTCACTTAGAGTTGGAGACTATGTGATACTTAGTACAGATTCTGGGCATTTGACCCTAGCAAGTGGTATTATAACAGATCTAAGCAGTCTCCATATATCTGTCTCTTTTTCTAAGCGCCTACGTTTGCCTGGAAGCACTCCTTCTACAGAGGCACGTGATCTTTTGAAGCAAGTTTGGCAGATTGACAAGGATGAATTTATGACTTCGTTTGCAATCATGAGGTTTAATCTTGTACAACTGTTTCTGCAAGGTGAACGAAATGCTCATCTTAGAAAGTTGATAGTAGATCTTTCGGCTCCAAGATTTGACGGTGGATGCATATTCAGCCAGGATCCAGCAATATCTTATATCCGGTCAGAGAAAAGTTTAAATGATGACCAGCGTCGAGCCATAATTAAGATACTTACAGCAAAGGATTATGCTCTCATTCTAGGAATGCCTGGAACAGGCAAGACGTCCACAATGGTTCATGCTGTGAAGGCTTTGTTGATGAGAGGTGTATCCATTTTGCTCACATCTTACACAAACACTGCTGTTGATAATTTACTTATCAAACTGAAATTTCAGAACATTGATTTTATACGAATTGGGAGAATTAATGCAGTGCATGAAGACATTCGCAGCCATTGCTTCTCGGAGTTGAACATACAAAGCGTGGAAGACATCAGAATGAGATTGGACCAAGTCAAAGTTGTTGCAGTTACTTGTTTGGGGATAACTAGCCCCTTACTTGTCAATAAAAAATTTGATCTATGCATAATGGATGAAGCTGGACAGATCACCCTTCCAGTTTCCCTTGGACCTTTGATGTTTGCTTCAACATTTGTCCTTGTTGGCGATCACTATCAGCTACCTCCTCTTGTTCAGGTTACAGAGGCTCGAGAAAATGGAATGGGGATAAGCTTGTTCTGTAAGCTTTCAGAAGCACATCCTCAAGCAATTTCAGCATTGCAAAGCCAGTATCGCATGTGCCGAGAGATTATGGAATTATCAAATGCCTTGATATATGGAGACAGATTGCGTTGTGGTTCTGAAGAAACAGCGTACGCAAAGCTTGAGTTTTCTAGTTTAAAGTTGTTCCCATCTTGGCTTAAGGAGGTTCTAAACCCATGCAAACCTGTTATCTTTGTTTGTACAGATCTATTACCTGCTTACGAGACAAGAGATCGCAAGATTGTGAACAACCCAATTGAAGCCAACATATTAGCAGAGGTGACGAATGGATTGCTTGATGGTGGGATTAGAGGGAATGATATTGGCATCATTACTCCGTACAACTCCCAGGCAAGCATCATTCGTCTCGCTATCAACATAGCCTCTGTGGAGATTCATACCATTGACAAATACCAGGGAAGAGATAAGGACTGCATTTTGGTGTCCTTTGTTAGGTCGAGTGAAAATCCAAAGAGCTGTACGACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATTACACGTGCCAAGAGAAAATTAATCATGGTGGGATCACGTAGAACACTATCAAAAGTTCCACTGTTGAAGCTTCTAATCAAGAAGGTCGAGGAGCAATCAGGAATTTTGAGTGTAACAAAGAAGGATATTCGCCAAAGTAGCAAGCTTCGGGATTGCACTTCGACCGACTTGTTGTAA 4173 42.49 MPPRKKPNSSSKKLNSNQQSQPSKFGIQHFFERHSQNVAQSQKLTSRSSDSKTDVSNSLKRGADDLNAAAVDSKGAAAATAAQKSELRVLPVNDAVLASENPKVPQGNDASCSSLNTTPENLVTAVRNDGDDHPNEVSPQFSKSVSLKRFKFSPGMLIKQSQDDGSDEITWKISPVNVRLQAASKQTPETIRVLANSSRLSSLRIRQCSRNKASSVEPENLEQLSSPELRPCQRSVVSLNKTGLKRLNPQHDMEPNGVAIDSLGGSGVSNSQSPFRTPPSLSYCDKIANGVECNEAQNHPTLRPHKKALLDLLDQVEDVIAVDTVASIDLGVHSSKLKGRNGNKLTTRVDSATTQVTKSLPDTVIKRPPSDFLVLEVTEKCELDATSGGRRSYKVLRLLNEQSGEERAVYLWEDWFDSIIAPGDAVNVIGEFDDEGRCHVDHDNNYVILHPDILVSGTRVAGHLTCPRRSVLDERLKCNEQSISALLGTLLHQIFQAGLMEEAPTVAFLEEVSRTVLQKSMENVYACGANEKDIRKTMNEAIPKMLHWITLFKCSMGSKAPTIEFRSNDGPKKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVTSNDNKRAENVMPLEFKTGKVPAGQAISMEHSAQVILYTLLMSERYQKHVGRGLLYYLQSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIQSVCKGCRHLDVCTIYHKMQNGSKDSSGLGVLFDSHTDHLKASHGTFFQHWERLIDLEAKETELVKRGVWHSRSVGKNQMSTCISSLVLTTLDERPHCTFEKDNRIIYRFVRQDLSSPCLKDSNGDSSNTDTSINEMDSSLRVGDYVILSTDSGHLTLASGIITDLSSLHISVSFSKRLRLPGSTPSTEARDLLKQVWQIDKDEFMTSFAIMRFNLVQLFLQGERNAHLRKLIVDLSAPRFDGGCIFSQDPAISYIRSEKSLNDDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGVSILLTSYTNTAVDNLLIKLKFQNIDFIRIGRINAVHEDIRSHCFSELNIQSVEDIRMRLDQVKVVAVTCLGITSPLLVNKKFDLCIMDEAGQITLPVSLGPLMFASTFVLVGDHYQLPPLVQVTEARENGMGISLFCKLSEAHPQAISALQSQYRMCREIMELSNALIYGDRLRCGSEETAYAKLEFSSLKLFPSWLKEVLNPCKPVIFVCTDLLPAYETRDRKIVNNPIEANILAEVTNGLLDGGIRGNDIGIITPYNSQASIIRLAINIASVEIHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKRKLIMVGSRRTLSKVPLLKLLIKKVEEQSGILSVTKKDIRQSSKLRDCTSTDLL 1390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1738044 1751976 + MC05g0243 Mch5g0260 687679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0260 1390 CDD SF1_C_Upf1 1169 1362 IPR047187 -
Mch5g0260 1390 FunFam DNA replication helicase Dna2 903 1166 - -
Mch5g0260 1390 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 968 1354 IPR027417 -
Mch5g0260 1390 Gene3D - 456 721 IPR011604 -
Mch5g0260 1390 MobiDBLite consensus disorder prediction 33 56 - -
Mch5g0260 1390 Gene3D - 1167 1382 IPR027417 -
Mch5g0260 1390 Pfam AAA domain 1145 1345 IPR041679 -
Mch5g0260 1390 FunFam DNA replication helicase Dna2 563 721 - -
Mch5g0260 1390 Pfam DNA replication factor Dna2 401 603 IPR014808 -
Mch5g0260 1390 FunFam DNA replication helicase 1167 1380 - -
Mch5g0260 1390 MobiDBLite consensus disorder prediction 8 26 - -
Mch5g0260 1390 CDD DNA2_N-like 456 692 - -
Mch5g0260 1390 CDD DEXXQc_DNA2 968 1168 IPR026851 GO:0017116(InterPro)
Mch5g0260 1390 Gene3D - 913 1166 IPR027417 -
Mch5g0260 1390 MobiDBLite consensus disorder prediction 1 62 - -
Mch5g0260 1390 Pfam AAA domain 1068 1134 IPR041677 GO:0004386(InterPro)
Mch5g0260 1390 Pfam AAA domain 969 1060 IPR041677 GO:0004386(InterPro)
Mch5g0260 1390 PANTHER DNA2/NAM7 HELICASE FAMILY 89 1363 IPR045055 GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0260 Mch-Chr5:1738044 Mch5g1400 Mch-Chr5:14979913 3.36E-45 dispersed
Mch9g1179 Mch-Chr9:12600982 Mch5g0260 Mch-Chr5:1738044 1.15E-15 dispersed
Mch10g1617 Mch-Chr10:16292167 Mch5g0260 Mch-Chr5:1738044 5.18E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0260 K10742 - csv:101220726 2244.16