Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0275 TATTTGTTGTTGATGGCGGGCTTAGACTTGGGTTCTGCTTCCCACTTCGTCCACCAGCTGCAGCACCGCCCCGTGGATCTCCACCTCCGGAGGCCGCCGGACGGAGGCGACGACGGCTCCGACCAGTTCCACGGCGGCGATAATGAAGAGCACATGAGCAACTCCCAGCAACCAAACTCCGGCGGAGAAATCGTGGGGCGGCGGCCGAGGGGCCGCCCGCCCGGTTCGAAAAACAAGCAGAAACCGCCGGTGATCATCACCAGAGAAAGCGCCAACACGTTGCGGGCCCACATCTTGGAAGTCAACTCCGGCTGCGATATCTTTGACTCCGTCGCCACGTACGCCCGTAAGCGCCAGCGGGGGATCTGTGTTTTGAGCGGCTCCGGCGCCGTCACCAACGTCACCCTCCGCCAACCCGCCTCCGCCGGAGCTGTCCTCACCCTCCATGGCAGGTATGAGATATTGTCCTTGTCGGGGTCGTTCTTACCGCCGCCGGCTCCGCCGGGCGCCACGAGTTTGACAATCTTTCTGGCCGGAGGGCAAGGGCAGATCGTCGGAGGGAATGTCGTCGGCTCTTTGATTGCTTCCGGACCGGTGATCGTCATCGCTTCATCGTTCACCAACGTCGCCTACGAGAGGCTGCCGTTGGACGAGGAAGAGCCGTCCAACGGCGGAGGTGGCTGCGGAGGGAGCCTCAGCAACCCATTTCCCGACCCGTCGGCCGCCGGTTTGCCGTTCTTCAATCTGCCGATGAATATGACGGCAAATCAAAGTCAGCTGCCGGTGGACGGATGGGGAGAAGGAAACTCCGGCGGGAGAGCATCTTATTGA 831 61.97 YLLLMAGLDLGSASHFVHQLQHRPVDLHLRRPPDGGDDGSDQFHGGDNEEHMSNSQQPNSGGEIVGRRPRGRPPGSKNKQKPPVIITRESANTLRAHILEVNSGCDIFDSVATYARKRQRGICVLSGSGAVTNVTLRQPASAGAVLTLHGRYEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGSLIASGPVIVIASSFTNVAYERLPLDEEEPSNGGGGCGGSLSNPFPDPSAAGLPFFNLPMNMTANQSQLPVDGWGEGNSGGRASY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1867047 1868700 - MC05g0258 Mch5g0275 687694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0275 276 MobiDBLite consensus disorder prediction 27 85 - -
Mch5g0275 276 MobiDBLite consensus disorder prediction 27 48 - -
Mch5g0275 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Mch5g0275 276 Gene3D - 94 222 - -
Mch5g0275 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 47 225 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch5g0275 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 219 - -
Mch5g0275 276 FunFam AT-hook motif nuclear-localized protein 94 221 - -
Mch5g0275 276 CDD DUF296 95 206 IPR005175 -
Mch5g0275 276 ProSiteProfiles PPC domain profile profile. 91 228 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0275 Mch-Chr5:1867047 Mch6g2578 Mch-Chr6:27638872 2.47E-84 dispersed
Mch10g1642 Mch-Chr10:16557884 Mch5g0275 Mch-Chr5:1867047 2.51E-102 wgd
Mch5g0275 Mch-Chr5:1867047 Mch6g2170 Mch-Chr6:24080895 1.90E-105 wgd
Mch5g0275 Mch-Chr5:1867047 Mch7g0794 Mch-Chr7:12564553 3.24E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0275 - - - 0.0