Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0295 ATGAGAACTCAAGCTCCACAAAAATCCCACATCTCCTCAAGAACCCAAAAAAAAAAAAGAAAAAGAAAAATGGCAACAATTAAAATTCGACAAAGCCTTTCAGTTGTTGCTCTTGTTGTTGTTCTTGTTTTTCCAAGCGCCATTTTTGGTTACTCAGAGAAAGAAATAAAATCATGGTGCAGCCAAACGCCGTATCCGGCGCCATGCGAGCACTTTCTCCGAACCAAAGCCGCCACTTCAAACAATTCTCCGATCACCGATAAATCCCATTTCCTCAAAATCCTCGTCGAAACGGCGCTCTCCACTGCCGTTTCGGCCCACAAAGACGCCATTTCCCTCGGGCCAAAGTGCCGCAACTCCCGCGAGAAATCCGCTTGGGCCGACTGCGTTTACCTCTACGACCAAATAATCTCACGGCTCAACCGGACTGCCGACCGCTGCTCCCGGTCCGACGCCCAGACCTGGCTCAGCGCCGCCCTCACCGCCCTCGAGACCTGCCGCACCGGCTTCGACGAGCTCGGGGTTTCCGCCTCCGGCTATCCCTTGACGGCGAATAACGTCTCCAAGTTGATCAGCGACGGGTTGTCGGTAAATGGACCGCCGTCGCCGGACGGGTTCGGCCCGCCGAGCCGGGTCGATGGGTTCCCGGTCTGGGTCAGCCCCGGGGACCGGAAGCTGCTGCAGTCCGGCTCGCCGGCGGGGAATGCTGACGTGGTGGTGGCGAAGGATGGGTCCGGGGACTTTCAGACGGTGGCGGCGGCGGTGGCGGCGGCGAAGGGTGGCGGGAGATTTGTGATATATGTGAAGGCGGGGGTTTATAGTGAGAATGTGGAGATCAAGGCGAAGAATGTTATGTTGGTCGGCGACGGAATCGGAAAAACTGTCATCACCGGAAGCAGAAGTGTCGGCGGCGGCTCCACCACTTTTAGATCAGCCACCGTTGCTGTCGATGGAGACGGATTCATCGCCCGTGACATTACCTTCAGAAACACCGCCGGAGCGAAGAACCACCAGGCGGTGGCGCTCCGGTCCGGCTCCGATCTCTCCGTCTTCTACCGCTGCGGATTCGAAGGCTTTCAGGACACTCTCTACGTCTACGCGGAGCGCCAATTTTACAAGCAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGAAACGCCGCCGTCGTGATCCAAGATTCCAACATAATCGCTCGCGATCCTCCTAACAAGACCATTACTCTCACCGCCCAAGGCCGGAGCGATCCGAATCAGAACACCGGAATCTCGATCCACAATTGCAGAGTCACCTCCGCCGGCGGCCTCAGCGGCGTCAAGGCCTACCTAGGGCGGCCGTGGCGCCAGTACTCGCGCACCGTTTTCATGAAATCGAACATCGGAGGATTCATAAATCCGGCCGGATGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTCTATTACGGCGAGTATTCGAATACCGGACCGGGATCTTCGACGGCTAATCGAGTGAAATGGAAGGGTTACCATGTGATTACCAGCGCGGCGGAGGCTTCTAAATTCACCGTCGGGAATTTCATTGCCGGCGGCTCGTGGTTGCCGAACACCGGCGTCCCCTTCACCTCCGGCCTCTGA 1620 56.73 MRTQAPQKSHISSRTQKKKRKRKMATIKIRQSLSVVALVVVLVFPSAIFGYSEKEIKSWCSQTPYPAPCEHFLRTKAATSNNSPITDKSHFLKILVETALSTAVSAHKDAISLGPKCRNSREKSAWADCVYLYDQIISRLNRTADRCSRSDAQTWLSAALTALETCRTGFDELGVSASGYPLTANNVSKLISDGLSVNGPPSPDGFGPPSRVDGFPVWVSPGDRKLLQSGSPAGNADVVVAKDGSGDFQTVAAAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLVGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITLTAQGRSDPNQNTGISIHNCRVTSAGGLSGVKAYLGRPWRQYSRTVFMKSNIGGFINPAGWMEWSGNFALNTLYYGEYSNTGPGSSTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPNTGVPFTSGL 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2003281 2006996 - MC05g_new0021 Mch5g0295 687714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0295 539 Pfam Plant invertase/pectin methylesterase inhibitor 55 196 IPR006501 GO:0004857(InterPro)
Mch5g0295 539 SMART PMEI_2 51 197 IPR006501 GO:0004857(InterPro)
Mch5g0295 539 NCBIfam pectinesterase inhibitor domain 31 189 IPR006501 GO:0004857(InterPro)
Mch5g0295 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 199 IPR035513 -
Mch5g0295 539 Gene3D - 233 539 IPR012334 -
Mch5g0295 539 CDD PMEI-like_3 58 202 - -
Mch5g0295 539 MobiDBLite consensus disorder prediction 1 24 - -
Mch5g0295 539 Pfam Pectinesterase 237 524 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch5g0295 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 197 IPR035513 -
Mch5g0295 539 SUPERFAMILY Pectin lyase-like 234 538 IPR011050 -
Mch5g0295 539 PANTHER PECTINESTERASE 33 530 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch5g0295 539 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
Mch5g0295 539 FunFam Pectinesterase 232 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0295 Mch-Chr5:2003281 Mch6g2635 Mch-Chr6:28118747 8.63E-199 dispersed
Mch5g0295 Mch-Chr5:2003281 Mch5g0296 Mch-Chr5:2020479 8.27E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0295 K01051 - csv:101217552 861.677